Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 PCDH8P1-201ENST00000428983 2773 ntBASIC18.65■□□□□ 0.58
CCDC42Q96M95 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 AC079328.2-201ENST00000561241 3354 ntBASIC18.65■□□□□ 0.58
CCDC42Q96M95 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 DOC2GP-204ENST00000639052 2548 ntBASIC18.65■□□□□ 0.58
CCDC42Q96M95 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC42Q96M95 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CCDC42Q96M95 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC42Q96M95 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 AC111152.3-201ENST00000569699 673 ntBASIC18.64■□□□□ 0.57
CCDC42Q96M95 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 HYMAI.1-201ENST00000620949 238 ntBASIC18.64■□□□□ 0.57
CCDC42Q96M95 AC133561.5-201ENST00000635547 218 ntBASIC18.64■□□□□ 0.57
CCDC42Q96M95 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 AC073508.3-201ENST00000619697 1419 ntBASIC18.64■□□□□ 0.57
CCDC42Q96M95 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC42Q96M95 FER1L4-210ENST00000615531 5998 ntBASIC18.64■□□□□ 0.57
CCDC42Q96M95 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC42Q96M95 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC42Q96M95 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 GUSBP12-201ENST00000513727 720 ntBASIC18.63■□□□□ 0.57
CCDC42Q96M95 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC42Q96M95 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms