Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM43Q96BQ3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM43Q96BQ3 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM43Q96BQ3 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM43Q96BQ3 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TRIM43Q96BQ3 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 AC018529.1-201ENST00000613063 361 ntBASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM43Q96BQ3 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 KRT18P55-202ENST00000578578 1546 ntBASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM43Q96BQ3 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 AC138969.3-201ENST00000546612 1459 ntBASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 AC138932.2-201ENST00000548268 1459 ntBASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 AC126755.4-201ENST00000549796 1459 ntBASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 RNU1-129P-201ENST00000384064 167 ntBASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 API5-211ENST00000534695 560 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 AC009407.1-201ENST00000568958 598 ntBASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 U1.21-201ENST00000580816 167 ntBASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 AC003101.2-201ENST00000612557 442 ntBASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM43Q96BQ3 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms