Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC60Q8IWA6 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 AC025580.3-201ENST00000617932 1424 ntBASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 PP12613-201ENST00000424958 2230 ntBASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 AC107918.2-201ENST00000530817 355 ntBASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 AC116353.5-201ENST00000638148 1699 ntBASIC19.11■□□□□ 0.65
CCDC60Q8IWA6 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 LINC00896-202ENST00000609602 2128 ntBASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 MIR3687-2-201ENST00000577708 61 ntBASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 MIR3687-1-201ENST00000614492 61 ntBASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 CROCCP2-202ENST00000412962 2773 ntBASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC60Q8IWA6 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 AL691403.2-201ENST00000618460 490 ntBASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC60Q8IWA6 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.08■□□□□ 0.65
CCDC60Q8IWA6 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms