Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.56■□□□□ 0.4
USP39Q53GS9 AC010654.1-201ENST00000615722 808 ntBASIC17.56■□□□□ 0.4
USP39Q53GS9 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.56■□□□□ 0.4
USP39Q53GS9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP39Q53GS9 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP39Q53GS9 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.56■□□□□ 0.4
USP39Q53GS9 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
USP39Q53GS9 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.56■□□□□ 0.4
USP39Q53GS9 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.56■□□□□ 0.4
USP39Q53GS9 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
USP39Q53GS9 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.56■□□□□ 0.4
USP39Q53GS9 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP39Q53GS9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP39Q53GS9 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
USP39Q53GS9 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
USP39Q53GS9 AC148477.5-201ENST00000625164 1645 ntBASIC17.55■□□□□ 0.4
USP39Q53GS9 GNAS-203ENST00000306120 1878 ntBASIC17.55■□□□□ 0.4
USP39Q53GS9 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.55■□□□□ 0.4
USP39Q53GS9 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
USP39Q53GS9 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.55■□□□□ 0.4
USP39Q53GS9 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
USP39Q53GS9 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.55■□□□□ 0.4
USP39Q53GS9 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.55■□□□□ 0.4
USP39Q53GS9 AC092364.2-202ENST00000597012 1073 ntBASIC17.55■□□□□ 0.4
USP39Q53GS9 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.55■□□□□ 0.4
USP39Q53GS9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
USP39Q53GS9 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.55■□□□□ 0.4
USP39Q53GS9 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.55■□□□□ 0.4
USP39Q53GS9 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
USP39Q53GS9 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
USP39Q53GS9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.54■□□□□ 0.4
USP39Q53GS9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
USP39Q53GS9 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
USP39Q53GS9 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.54■□□□□ 0.4
USP39Q53GS9 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.54■□□□□ 0.4
USP39Q53GS9 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.54■□□□□ 0.4
USP39Q53GS9 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.54■□□□□ 0.4
USP39Q53GS9 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
USP39Q53GS9 GGTLC5P-201ENST00000617623 998 ntBASIC17.54■□□□□ 0.4
USP39Q53GS9 AL805961.1-202ENST00000641562 540 ntBASIC17.54■□□□□ 0.4
USP39Q53GS9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
USP39Q53GS9 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
USP39Q53GS9 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
USP39Q53GS9 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
USP39Q53GS9 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
USP39Q53GS9 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.53■□□□□ 0.4
USP39Q53GS9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.53■□□□□ 0.4
USP39Q53GS9 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
USP39Q53GS9 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
USP39Q53GS9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.53■□□□□ 0.4
USP39Q53GS9 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.53■□□□□ 0.4
USP39Q53GS9 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.53■□□□□ 0.4
USP39Q53GS9 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
USP39Q53GS9 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms