Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDH1Q08174 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
PCDH1Q08174 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
PCDH1Q08174 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.67■□□□□ 0.26
PCDH1Q08174 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.67■□□□□ 0.26
PCDH1Q08174 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.67■□□□□ 0.26
PCDH1Q08174 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDH1Q08174 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PCDH1Q08174 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
PCDH1Q08174 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.67■□□□□ 0.26
PCDH1Q08174 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 AC012313.1-201ENST00000593393 3059 ntBASIC16.67■□□□□ 0.26
PCDH1Q08174 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDH1Q08174 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
PCDH1Q08174 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PCDH1Q08174 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
PCDH1Q08174 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
PCDH1Q08174 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PCDH1Q08174 RBM17P3-201ENST00000417687 1192 ntBASIC16.66■□□□□ 0.26
PCDH1Q08174 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.66■□□□□ 0.26
PCDH1Q08174 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.66■□□□□ 0.26
PCDH1Q08174 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.66■□□□□ 0.26
PCDH1Q08174 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDH1Q08174 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 OR6D1P-203ENST00000641209 4860 ntBASIC16.66■□□□□ 0.26
PCDH1Q08174 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
PCDH1Q08174 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
PCDH1Q08174 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PCDH1Q08174 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PCDH1Q08174 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.66■□□□□ 0.26
PCDH1Q08174 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.66■□□□□ 0.26
PCDH1Q08174 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDH1Q08174 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDH1Q08174 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDH1Q08174 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
PCDH1Q08174 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.65■□□□□ 0.26
PCDH1Q08174 AC132008.2-207ENST00000454517 770 ntBASIC16.65■□□□□ 0.26
PCDH1Q08174 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.65■□□□□ 0.26
PCDH1Q08174 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.65■□□□□ 0.26
PCDH1Q08174 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDH1Q08174 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 AC093458.2-201ENST00000623150 629 ntBASIC16.65■□□□□ 0.26
PCDH1Q08174 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.65■□□□□ 0.26
PCDH1Q08174 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 GPR89P-201ENST00000407924 1495 ntBASIC16.65■□□□□ 0.26
PCDH1Q08174 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 PCDHA12-202ENST00000613593 2588 ntBASIC16.65■□□□□ 0.26
PCDH1Q08174 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PCDH1Q08174 CROCCP1-201ENST00000426910 5675 ntBASIC16.65■□□□□ 0.26
PCDH1Q08174 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH1Q08174 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PCDH1Q08174 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
PCDH1Q08174 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.64■□□□□ 0.26
PCDH1Q08174 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.64■□□□□ 0.26
PCDH1Q08174 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH1Q08174 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH1Q08174 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH1Q08174 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH1Q08174 AC022211.2-201ENST00000585075 2527 ntBASIC16.64■□□□□ 0.25
PCDH1Q08174 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH1Q08174 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms