Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC005829.1-201ENST00000570002 483 ntBASIC18.36■□□□□ 0.53
SOX4Q06945 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
SOX4Q06945 AC092919.2-201ENST00000623631 1645 ntBASIC18.36■□□□□ 0.53
SOX4Q06945 AC007064.4-201ENST00000637740 555 ntBASIC18.36■□□□□ 0.53
SOX4Q06945 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX4Q06945 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SOX4Q06945 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX4Q06945 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX4Q06945 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX4Q06945 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 AC129492.6-201ENST00000611383 1305 ntBASIC18.35■□□□□ 0.53
SOX4Q06945 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX4Q06945 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 HTR5BP-201ENST00000430851 1154 ntBASIC18.35■□□□□ 0.53
SOX4Q06945 AL513480.1-201ENST00000451731 511 ntBASIC18.35■□□□□ 0.53
SOX4Q06945 AC074386.1-202ENST00000463561 864 ntBASIC18.35■□□□□ 0.53
SOX4Q06945 AC092183.1-201ENST00000469884 875 ntBASIC18.35■□□□□ 0.53
SOX4Q06945 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX4Q06945 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.35■□□□□ 0.53
SOX4Q06945 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX4Q06945 MIR4469-201ENST00000583919 79 ntBASIC18.35■□□□□ 0.53
SOX4Q06945 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.35■□□□□ 0.53
SOX4Q06945 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX4Q06945 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SOX4Q06945 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SOX4Q06945 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SOX4Q06945 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX4Q06945 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX4Q06945 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX4Q06945 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SOX4Q06945 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SOX4Q06945 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SOX4Q06945 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SOX4Q06945 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.34■□□□□ 0.53
SOX4Q06945 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.34■□□□□ 0.53
SOX4Q06945 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.34■□□□□ 0.53
SOX4Q06945 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX4Q06945 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.34■□□□□ 0.53
SOX4Q06945 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.34■□□□□ 0.53
SOX4Q06945 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SOX4Q06945 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.34■□□□□ 0.53
SOX4Q06945 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SOX4Q06945 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SOX4Q06945 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX4Q06945 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SOX4Q06945 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.33■□□□□ 0.53
SOX4Q06945 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SOX4Q06945 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.33■□□□□ 0.53
SOX4Q06945 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SOX4Q06945 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SOX4Q06945 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.33■□□□□ 0.53
SOX4Q06945 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.33■□□□□ 0.53
SOX4Q06945 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SOX4Q06945 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.33■□□□□ 0.52
SOX4Q06945 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX4Q06945 AC211486.1-202ENST00000416371 468 ntBASIC18.33■□□□□ 0.52
SOX4Q06945 DNAJB3-202ENST00000449667 1266 ntBASIC18.33■□□□□ 0.52
SOX4Q06945 AC211476.1-201ENST00000503899 468 ntBASIC18.33■□□□□ 0.52
SOX4Q06945 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SOX4Q06945 AL031432.2-201ENST00000566714 459 ntBASIC18.33■□□□□ 0.52
SOX4Q06945 AL928711.1-201ENST00000570165 459 ntBASIC18.33■□□□□ 0.52
SOX4Q06945 AP001160.2-201ENST00000596071 487 ntBASIC18.33■□□□□ 0.52
SOX4Q06945 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.33■□□□□ 0.52
SOX4Q06945 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SOX4Q06945 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX4Q06945 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX4Q06945 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SOX4Q06945 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SOX4Q06945 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX4Q06945 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SOX4Q06945 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SOX4Q06945 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms