Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 PAWRP1-201ENST00000451083 565 ntBASIC22.56■■□□□ 1.2
RIPK4P57078 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
RIPK4P57078 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
RIPK4P57078 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RIPK4P57078 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC22.56■■□□□ 1.2
RIPK4P57078 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
RIPK4P57078 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
RIPK4P57078 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC22.56■■□□□ 1.2
RIPK4P57078 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
RIPK4P57078 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
RIPK4P57078 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
RIPK4P57078 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
RIPK4P57078 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
RIPK4P57078 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
RIPK4P57078 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RIPK4P57078 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
RIPK4P57078 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC22.55■■□□□ 1.2
RIPK4P57078 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC22.55■■□□□ 1.2
RIPK4P57078 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC22.55■■□□□ 1.2
RIPK4P57078 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RIPK4P57078 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RIPK4P57078 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
RIPK4P57078 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RIPK4P57078 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RIPK4P57078 EML3-212ENST00000494176 2901 ntTSL 2 BASIC22.55■■□□□ 1.2
RIPK4P57078 EML3-216ENST00000529309 2909 ntTSL 2 BASIC22.55■■□□□ 1.2
RIPK4P57078 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
RIPK4P57078 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC22.55■■□□□ 1.2
RIPK4P57078 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
RIPK4P57078 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
RIPK4P57078 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
RIPK4P57078 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC22.54■■□□□ 1.2
RIPK4P57078 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC22.54■■□□□ 1.2
RIPK4P57078 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
RIPK4P57078 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RIPK4P57078 MIR940-201ENST00000401276 94 ntBASIC22.54■■□□□ 1.2
RIPK4P57078 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC22.54■■□□□ 1.2
RIPK4P57078 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RIPK4P57078 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC22.54■■□□□ 1.2
RIPK4P57078 OR7E47P-204ENST00000575924 449 ntBASIC22.54■■□□□ 1.2
RIPK4P57078 GGTLC5P-201ENST00000617623 998 ntBASIC22.54■■□□□ 1.2
RIPK4P57078 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC22.54■■□□□ 1.2
RIPK4P57078 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC22.54■■□□□ 1.2
RIPK4P57078 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RIPK4P57078 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC22.54■■□□□ 1.2
RIPK4P57078 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC22.54■■□□□ 1.2
RIPK4P57078 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC22.54■■□□□ 1.2
RIPK4P57078 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RIPK4P57078 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RIPK4P57078 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC22.54■■□□□ 1.2
RIPK4P57078 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
RIPK4P57078 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC22.54■■□□□ 1.2
RIPK4P57078 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 AL645608.8-201ENST00000606034 2086 ntBASIC22.53■■□□□ 1.2
RIPK4P57078 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 AC007967.2-201ENST00000432613 625 ntBASIC22.53■■□□□ 1.2
RIPK4P57078 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC22.53■■□□□ 1.2
RIPK4P57078 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC22.53■■□□□ 1.2
RIPK4P57078 POLD2P1-201ENST00000511220 997 ntBASIC22.53■■□□□ 1.2
RIPK4P57078 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC22.53■■□□□ 1.2
RIPK4P57078 AC140113.2-201ENST00000604370 208 ntBASIC22.53■■□□□ 1.2
RIPK4P57078 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
RIPK4P57078 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RIPK4P57078 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RIPK4P57078 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
RIPK4P57078 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
RIPK4P57078 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
RIPK4P57078 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC22.52■■□□□ 1.2
RIPK4P57078 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC22.52■■□□□ 1.2
RIPK4P57078 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC22.52■■□□□ 1.2
RIPK4P57078 KRT18P58-201ENST00000527480 1120 ntBASIC22.52■■□□□ 1.2
RIPK4P57078 TCAP-202ENST00000578283 583 ntTSL 5 BASIC22.52■■□□□ 1.2
RIPK4P57078 AC027601.4-201ENST00000611259 610 ntBASIC22.52■■□□□ 1.2
RIPK4P57078 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RIPK4P57078 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RIPK4P57078 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC22.52■■□□□ 1.2
RIPK4P57078 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
RIPK4P57078 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RIPK4P57078 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC22.51■■□□□ 1.19
RIPK4P57078 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RIPK4P57078 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC22.51■■□□□ 1.19
RIPK4P57078 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC22.51■■□□□ 1.19
RIPK4P57078 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
RIPK4P57078 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RIPK4P57078 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC22.51■■□□□ 1.19
RIPK4P57078 AL023806.1-201ENST00000603994 1649 ntBASIC22.51■■□□□ 1.19
RIPK4P57078 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RIPK4P57078 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RIPK4P57078 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RIPK4P57078 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms