Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
RORAP35398 AC134043.2-201ENST00000624206 2238 ntBASIC16.42■□□□□ 0.22
RORAP35398 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RORAP35398 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RORAP35398 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RORAP35398 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RORAP35398 YBX2P1-201ENST00000394192 760 ntBASIC16.42■□□□□ 0.22
RORAP35398 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.42■□□□□ 0.22
RORAP35398 AC004832.2-201ENST00000426397 482 ntBASIC16.42■□□□□ 0.22
RORAP35398 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RORAP35398 KRT18P2-201ENST00000447938 1258 ntBASIC16.42■□□□□ 0.22
RORAP35398 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.42■□□□□ 0.22
RORAP35398 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.42■□□□□ 0.22
RORAP35398 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RORAP35398 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RORAP35398 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.42■□□□□ 0.22
RORAP35398 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RORAP35398 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
RORAP35398 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.42■□□□□ 0.22
RORAP35398 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RORAP35398 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.41■□□□□ 0.22
RORAP35398 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
RORAP35398 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.41■□□□□ 0.22
RORAP35398 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.41■□□□□ 0.22
RORAP35398 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.41■□□□□ 0.22
RORAP35398 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 UPF3AP3-201ENST00000420996 769 ntBASIC16.41■□□□□ 0.22
RORAP35398 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.41■□□□□ 0.22
RORAP35398 PRSS29P-201ENST00000440800 595 ntBASIC16.41■□□□□ 0.22
RORAP35398 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.41■□□□□ 0.22
RORAP35398 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.41■□□□□ 0.22
RORAP35398 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.41■□□□□ 0.22
RORAP35398 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
RORAP35398 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
RORAP35398 PCDHB18P-201ENST00000524813 2368 ntBASIC16.41■□□□□ 0.22
RORAP35398 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RORAP35398 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
RORAP35398 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RORAP35398 AC068880.1-201ENST00000507289 2297 ntBASIC16.4■□□□□ 0.22
RORAP35398 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RORAP35398 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RORAP35398 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.4■□□□□ 0.22
RORAP35398 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 LINC00304-203ENST00000565008 1864 ntBASIC16.4■□□□□ 0.22
RORAP35398 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.4■□□□□ 0.22
RORAP35398 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.4■□□□□ 0.22
RORAP35398 AP002414.1-201ENST00000391405 1147 ntBASIC16.4■□□□□ 0.22
RORAP35398 RPSAP43-201ENST00000402237 625 ntBASIC16.4■□□□□ 0.22
RORAP35398 PTCHD3P3-201ENST00000403073 906 ntBASIC16.4■□□□□ 0.22
RORAP35398 CRYGEP-201ENST00000412192 528 ntBASIC16.4■□□□□ 0.22
RORAP35398 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.4■□□□□ 0.22
RORAP35398 ACTG1P4-201ENST00000425123 1122 ntBASIC16.4■□□□□ 0.22
RORAP35398 GPX1P2-201ENST00000429271 606 ntBASIC16.4■□□□□ 0.22
RORAP35398 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.4■□□□□ 0.22
RORAP35398 VN2R19P-201ENST00000442399 1052 ntBASIC16.4■□□□□ 0.22
RORAP35398 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
RORAP35398 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.4■□□□□ 0.22
RORAP35398 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.4■□□□□ 0.22
RORAP35398 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.4■□□□□ 0.22
RORAP35398 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.4■□□□□ 0.22
RORAP35398 AC002347.1-201ENST00000569543 541 ntBASIC16.4■□□□□ 0.22
RORAP35398 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.4■□□□□ 0.22
RORAP35398 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.4■□□□□ 0.22
RORAP35398 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.4■□□□□ 0.22
RORAP35398 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.4■□□□□ 0.22
RORAP35398 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.4■□□□□ 0.22
RORAP35398 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RORAP35398 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
RORAP35398 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RORAP35398 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.4■□□□□ 0.22
RORAP35398 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RORAP35398 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
RORAP35398 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.39■□□□□ 0.21
RORAP35398 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.39■□□□□ 0.21
RORAP35398 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms