Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.39■□□□□ 0.37
PTPN4P29074 RN7SL510P-201ENST00000581311 263 ntBASIC17.39■□□□□ 0.37
PTPN4P29074 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PTPN4P29074 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 Z83836.1-201ENST00000624605 1642 ntBASIC17.39■□□□□ 0.37
PTPN4P29074 MST1L-201ENST00000442552 2185 ntBASIC17.39■□□□□ 0.37
PTPN4P29074 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.39■□□□□ 0.37
PTPN4P29074 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PTPN4P29074 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
PTPN4P29074 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PTPN4P29074 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.38■□□□□ 0.37
PTPN4P29074 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 PCDHB17P-201ENST00000539533 2393 ntBASIC17.38■□□□□ 0.37
PTPN4P29074 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
PTPN4P29074 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PTPN4P29074 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.38■□□□□ 0.37
PTPN4P29074 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.38■□□□□ 0.37
PTPN4P29074 DRAXINP1-201ENST00000437611 948 ntBASIC17.38■□□□□ 0.37
PTPN4P29074 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.38■□□□□ 0.37
PTPN4P29074 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.38■□□□□ 0.37
PTPN4P29074 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.38■□□□□ 0.37
PTPN4P29074 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.38■□□□□ 0.37
PTPN4P29074 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
PTPN4P29074 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PTPN4P29074 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.38■□□□□ 0.37
PTPN4P29074 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.38■□□□□ 0.37
PTPN4P29074 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PTPN4P29074 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN4P29074 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN4P29074 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PTPN4P29074 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
PTPN4P29074 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN4P29074 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 AC004870.1-201ENST00000315132 882 ntBASIC17.37■□□□□ 0.37
PTPN4P29074 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN4P29074 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.37■□□□□ 0.37
PTPN4P29074 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 MIR149-201ENST00000384879 89 ntBASIC17.37■□□□□ 0.37
PTPN4P29074 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN4P29074 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 LINC00265-3P-201ENST00000447588 903 ntBASIC17.37■□□□□ 0.37
PTPN4P29074 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.37■□□□□ 0.37
PTPN4P29074 TPSP2-201ENST00000561760 610 ntBASIC17.37■□□□□ 0.37
PTPN4P29074 AC005332.3-201ENST00000589904 676 ntBASIC17.37■□□□□ 0.37
PTPN4P29074 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.37■□□□□ 0.37
PTPN4P29074 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.37■□□□□ 0.37
PTPN4P29074 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.37■□□□□ 0.37
PTPN4P29074 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PTPN4P29074 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.37■□□□□ 0.37
PTPN4P29074 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.37■□□□□ 0.37
PTPN4P29074 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
PTPN4P29074 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PTPN4P29074 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PTPN4P29074 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms