Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX1P28360 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSX1P28360 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.84■□□□□ 0.13
MSX1P28360 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX1P28360 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX1P28360 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSX1P28360 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
MSX1P28360 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
MSX1P28360 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.84■□□□□ 0.13
MSX1P28360 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.84■□□□□ 0.13
MSX1P28360 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
MSX1P28360 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
MSX1P28360 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
MSX1P28360 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
MSX1P28360 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.83■□□□□ 0.13
MSX1P28360 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX1P28360 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX1P28360 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX1P28360 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX1P28360 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX1P28360 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.83■□□□□ 0.12
MSX1P28360 ACTG1P4-201ENST00000425123 1122 ntBASIC15.83■□□□□ 0.12
MSX1P28360 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.83■□□□□ 0.12
MSX1P28360 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX1P28360 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.83■□□□□ 0.12
MSX1P28360 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
MSX1P28360 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX1P28360 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX1P28360 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
MSX1P28360 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
MSX1P28360 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX1P28360 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.83■□□□□ 0.12
MSX1P28360 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX1P28360 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.83■□□□□ 0.12
MSX1P28360 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX1P28360 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
MSX1P28360 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
MSX1P28360 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.82■□□□□ 0.12
MSX1P28360 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.82■□□□□ 0.12
MSX1P28360 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX1P28360 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MSX1P28360 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX1P28360 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.82■□□□□ 0.12
MSX1P28360 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
MSX1P28360 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
MSX1P28360 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.82■□□□□ 0.12
MSX1P28360 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.82■□□□□ 0.12
MSX1P28360 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.82■□□□□ 0.12
MSX1P28360 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.82■□□□□ 0.12
MSX1P28360 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX1P28360 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC15.82■□□□□ 0.12
MSX1P28360 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX1P28360 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX1P28360 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX1P28360 AL135999.2-201ENST00000622438 1686 ntBASIC15.82■□□□□ 0.12
MSX1P28360 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.82■□□□□ 0.12
MSX1P28360 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX1P28360 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.81■□□□□ 0.12
MSX1P28360 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.81■□□□□ 0.12
MSX1P28360 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
MSX1P28360 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX1P28360 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.81■□□□□ 0.12
MSX1P28360 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms