Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 AL118508.1-201ENST00000613502 2345 ntBASIC13.2□□□□□ -0.3
HLA-DMBP28068 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HLA-DMBP28068 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HLA-DMBP28068 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 BET1L-202ENST00000332865 533 ntTSL 5 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 PON3-205ENST00000451904 1053 ntTSL 3 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 AC002558.1-201ENST00000488906 803 ntBASIC13.19□□□□□ -0.3
HLA-DMBP28068 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 NDUFV2-AS1-203ENST00000608008 779 ntBASIC13.19□□□□□ -0.3
HLA-DMBP28068 AC019129.2-201ENST00000609837 1235 ntBASIC13.19□□□□□ -0.3
HLA-DMBP28068 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC13.19□□□□□ -0.3
HLA-DMBP28068 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 AC093525.9-201ENST00000624961 1746 ntBASIC13.19□□□□□ -0.3
HLA-DMBP28068 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
HLA-DMBP28068 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HLA-DMBP28068 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 KRT18P56-201ENST00000507275 550 ntBASIC13.18□□□□□ -0.3
HLA-DMBP28068 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC13.18□□□□□ -0.3
HLA-DMBP28068 AC124864.1-201ENST00000623408 392 ntBASIC13.18□□□□□ -0.3
HLA-DMBP28068 AC105020.1-201ENST00000435356 2205 ntBASIC13.18□□□□□ -0.3
HLA-DMBP28068 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
HLA-DMBP28068 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms