Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 UXT-AS1-201ENST00000590504 1525 ntBASIC16.4■□□□□ 0.22
COL5A1P20908 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL5A1P20908 RNU1-129P-201ENST00000384064 167 ntBASIC16.4■□□□□ 0.22
COL5A1P20908 MRPS18AP1-201ENST00000414458 589 ntBASIC16.4■□□□□ 0.22
COL5A1P20908 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.4■□□□□ 0.22
COL5A1P20908 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.4■□□□□ 0.22
COL5A1P20908 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.4■□□□□ 0.22
COL5A1P20908 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.4■□□□□ 0.22
COL5A1P20908 U1.21-201ENST00000580816 167 ntBASIC16.4■□□□□ 0.22
COL5A1P20908 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.4■□□□□ 0.22
COL5A1P20908 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.4■□□□□ 0.22
COL5A1P20908 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.4■□□□□ 0.22
COL5A1P20908 AL031055.1-201ENST00000606362 631 ntBASIC16.4■□□□□ 0.22
COL5A1P20908 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL5A1P20908 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL5A1P20908 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 AC012569.1-201ENST00000591191 1524 ntBASIC16.4■□□□□ 0.22
COL5A1P20908 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL5A1P20908 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
COL5A1P20908 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL5A1P20908 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL5A1P20908 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL5A1P20908 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL5A1P20908 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.39■□□□□ 0.21
COL5A1P20908 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
COL5A1P20908 GAPDHP21-201ENST00000450301 1010 ntBASIC16.39■□□□□ 0.21
COL5A1P20908 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL5A1P20908 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.39■□□□□ 0.21
COL5A1P20908 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL5A1P20908 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.39■□□□□ 0.21
COL5A1P20908 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.39■□□□□ 0.21
COL5A1P20908 AL353732.1-201ENST00000569618 1459 ntBASIC16.39■□□□□ 0.21
COL5A1P20908 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL5A1P20908 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL5A1P20908 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.39■□□□□ 0.21
COL5A1P20908 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL5A1P20908 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL5A1P20908 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL5A1P20908 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.38■□□□□ 0.21
COL5A1P20908 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.38■□□□□ 0.21
COL5A1P20908 AC008267.7-201ENST00000624570 1194 ntBASIC16.38■□□□□ 0.21
COL5A1P20908 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.38■□□□□ 0.21
COL5A1P20908 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL5A1P20908 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.38■□□□□ 0.21
COL5A1P20908 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 AC068880.1-201ENST00000507289 2297 ntBASIC16.38■□□□□ 0.21
COL5A1P20908 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.38■□□□□ 0.21
COL5A1P20908 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.38■□□□□ 0.21
COL5A1P20908 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 AC004890.2-204ENST00000481968 304 ntBASIC16.38■□□□□ 0.21
COL5A1P20908 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.38■□□□□ 0.21
COL5A1P20908 AC097493.3-201ENST00000509725 367 ntBASIC16.38■□□□□ 0.21
COL5A1P20908 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.38■□□□□ 0.21
COL5A1P20908 AP000842.3-202ENST00000569238 1080 ntBASIC16.38■□□□□ 0.21
COL5A1P20908 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.38■□□□□ 0.21
COL5A1P20908 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.38■□□□□ 0.21
COL5A1P20908 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL5A1P20908 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL5A1P20908 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL5A1P20908 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL5A1P20908 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL5A1P20908 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.37■□□□□ 0.21
COL5A1P20908 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL5A1P20908 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
COL5A1P20908 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.37■□□□□ 0.21
COL5A1P20908 GNAS-203ENST00000306120 1878 ntBASIC16.37■□□□□ 0.21
COL5A1P20908 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
COL5A1P20908 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms