Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.21■□□□□ 0.35
MSH3P20585 AC079781.3-201ENST00000449110 356 ntBASIC17.21■□□□□ 0.35
MSH3P20585 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
MSH3P20585 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH3P20585 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH3P20585 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.21■□□□□ 0.35
MSH3P20585 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH3P20585 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.21■□□□□ 0.35
MSH3P20585 AL031008.1-201ENST00000619963 541 ntBASIC17.21■□□□□ 0.35
MSH3P20585 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
MSH3P20585 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
MSH3P20585 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
MSH3P20585 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
MSH3P20585 AC004817.3-201ENST00000602957 2129 ntBASIC17.21■□□□□ 0.35
MSH3P20585 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH3P20585 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.21■□□□□ 0.35
MSH3P20585 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
MSH3P20585 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.21■□□□□ 0.34
MSH3P20585 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.34
MSH3P20585 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
MSH3P20585 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH3P20585 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
MSH3P20585 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
MSH3P20585 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH3P20585 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
MSH3P20585 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 AC073648.2-201ENST00000510116 352 ntBASIC17.2■□□□□ 0.34
MSH3P20585 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH3P20585 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH3P20585 AC016396.2-201ENST00000562575 1417 ntBASIC17.2■□□□□ 0.34
MSH3P20585 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH3P20585 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.2■□□□□ 0.34
MSH3P20585 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.2■□□□□ 0.34
MSH3P20585 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MSH3P20585 AC009053.2-201ENST00000563701 2365 ntBASIC17.2■□□□□ 0.34
MSH3P20585 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
MSH3P20585 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH3P20585 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH3P20585 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH3P20585 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH3P20585 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.19■□□□□ 0.34
MSH3P20585 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.19■□□□□ 0.34
MSH3P20585 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.19■□□□□ 0.34
MSH3P20585 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH3P20585 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.19■□□□□ 0.34
MSH3P20585 FAM197Y8-203ENST00000450145 560 ntBASIC17.19■□□□□ 0.34
MSH3P20585 PRYP5-201ENST00000451909 266 ntBASIC17.19■□□□□ 0.34
MSH3P20585 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
MSH3P20585 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.19■□□□□ 0.34
MSH3P20585 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.19■□□□□ 0.34
MSH3P20585 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH3P20585 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.19■□□□□ 0.34
MSH3P20585 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH3P20585 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH3P20585 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.19■□□□□ 0.34
MSH3P20585 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSH3P20585 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH3P20585 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH3P20585 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
MSH3P20585 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH3P20585 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH3P20585 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
MSH3P20585 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
MSH3P20585 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
MSH3P20585 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
MSH3P20585 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms