Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
HOXC4P09017 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.75■□□□□ 0.27
HOXC4P09017 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HOXC4P09017 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.74■□□□□ 0.27
HOXC4P09017 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 AC140658.5-201ENST00000438532 169 ntBASIC16.74■□□□□ 0.27
HOXC4P09017 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.74■□□□□ 0.27
HOXC4P09017 AC092183.1-201ENST00000469884 875 ntBASIC16.74■□□□□ 0.27
HOXC4P09017 AC124947.2-201ENST00000547118 1133 ntBASIC16.74■□□□□ 0.27
HOXC4P09017 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.74■□□□□ 0.27
HOXC4P09017 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.74■□□□□ 0.27
HOXC4P09017 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.74■□□□□ 0.27
HOXC4P09017 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.74■□□□□ 0.27
HOXC4P09017 AC091167.2-201ENST00000579581 588 ntBASIC16.74■□□□□ 0.27
HOXC4P09017 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.74■□□□□ 0.27
HOXC4P09017 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HOXC4P09017 FRMD8P1-201ENST00000440433 1524 ntBASIC16.74■□□□□ 0.27
HOXC4P09017 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.74■□□□□ 0.27
HOXC4P09017 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HOXC4P09017 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HOXC4P09017 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.74■□□□□ 0.27
HOXC4P09017 AC068880.1-201ENST00000507289 2297 ntBASIC16.73■□□□□ 0.27
HOXC4P09017 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HOXC4P09017 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC4P09017 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.73■□□□□ 0.27
HOXC4P09017 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC4P09017 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HOXC4P09017 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.73■□□□□ 0.27
HOXC4P09017 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC4P09017 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.73■□□□□ 0.27
HOXC4P09017 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.73■□□□□ 0.27
HOXC4P09017 AC002056.1-201ENST00000395613 760 ntBASIC16.73■□□□□ 0.27
HOXC4P09017 HCG4-201ENST00000418983 998 ntBASIC16.73■□□□□ 0.27
HOXC4P09017 FAM58CP-201ENST00000435741 640 ntBASIC16.73■□□□□ 0.27
HOXC4P09017 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC4P09017 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.73■□□□□ 0.27
HOXC4P09017 AC112191.1-201ENST00000523689 701 ntBASIC16.73■□□□□ 0.27
HOXC4P09017 AL078644.1-201ENST00000609881 752 ntBASIC16.73■□□□□ 0.27
HOXC4P09017 AC091812.2-201ENST00000619081 385 ntBASIC16.73■□□□□ 0.27
HOXC4P09017 AC092902.6-201ENST00000641783 218 ntBASIC16.73■□□□□ 0.27
HOXC4P09017 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
HOXC4P09017 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC4P09017 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HOXC4P09017 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.73■□□□□ 0.27
HOXC4P09017 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HOXC4P09017 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.73■□□□□ 0.27
HOXC4P09017 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HOXC4P09017 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.72■□□□□ 0.27
HOXC4P09017 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.72■□□□□ 0.27
HOXC4P09017 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HOXC4P09017 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HOXC4P09017 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.72■□□□□ 0.27
HOXC4P09017 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.72■□□□□ 0.27
HOXC4P09017 CEND1P1-201ENST00000451006 455 ntBASIC16.72■□□□□ 0.27
HOXC4P09017 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
HOXC4P09017 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.72■□□□□ 0.27
HOXC4P09017 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.72■□□□□ 0.27
HOXC4P09017 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.72■□□□□ 0.27
HOXC4P09017 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms