Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SEMA3DO95025 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
SEMA3DO95025 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SEMA3DO95025 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.58■□□□□ 0.25
SEMA3DO95025 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.58■□□□□ 0.25
SEMA3DO95025 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SEMA3DO95025 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SEMA3DO95025 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SEMA3DO95025 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.58■□□□□ 0.24
SEMA3DO95025 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
SEMA3DO95025 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
SEMA3DO95025 KRT16P4-201ENST00000453883 522 ntBASIC16.58■□□□□ 0.24
SEMA3DO95025 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.58■□□□□ 0.24
SEMA3DO95025 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.58■□□□□ 0.24
SEMA3DO95025 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SEMA3DO95025 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SEMA3DO95025 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SEMA3DO95025 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.58■□□□□ 0.24
SEMA3DO95025 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
SEMA3DO95025 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
SEMA3DO95025 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.58■□□□□ 0.24
SEMA3DO95025 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.58■□□□□ 0.24
SEMA3DO95025 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.58■□□□□ 0.24
SEMA3DO95025 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SEMA3DO95025 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.57■□□□□ 0.24
SEMA3DO95025 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
SEMA3DO95025 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SEMA3DO95025 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.57■□□□□ 0.24
SEMA3DO95025 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.57■□□□□ 0.24
SEMA3DO95025 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.57■□□□□ 0.24
SEMA3DO95025 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.57■□□□□ 0.24
SEMA3DO95025 NUS1P2-201ENST00000417358 873 ntBASIC16.57■□□□□ 0.24
SEMA3DO95025 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.57■□□□□ 0.24
SEMA3DO95025 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.57■□□□□ 0.24
SEMA3DO95025 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.57■□□□□ 0.24
SEMA3DO95025 MIR5100-201ENST00000579544 119 ntBASIC16.57■□□□□ 0.24
SEMA3DO95025 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
SEMA3DO95025 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.57■□□□□ 0.24
SEMA3DO95025 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.57■□□□□ 0.24
SEMA3DO95025 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
SEMA3DO95025 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
SEMA3DO95025 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SEMA3DO95025 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SEMA3DO95025 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 LINC02012-201ENST00000608206 1725 ntBASIC16.56■□□□□ 0.24
SEMA3DO95025 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.56■□□□□ 0.24
SEMA3DO95025 AL135999.2-201ENST00000622438 1686 ntBASIC16.56■□□□□ 0.24
SEMA3DO95025 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 AL121761.2-201ENST00000598007 1648 ntBASIC16.56■□□□□ 0.24
SEMA3DO95025 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SEMA3DO95025 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.56■□□□□ 0.24
SEMA3DO95025 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 AC018695.7-201ENST00000624587 2492 ntBASIC16.56■□□□□ 0.24
SEMA3DO95025 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SEMA3DO95025 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SEMA3DO95025 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
SEMA3DO95025 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
SEMA3DO95025 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms