Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDKL5O76039 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CDKL5O76039 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.08■□□□□ 0.81
CDKL5O76039 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CDKL5O76039 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CDKL5O76039 GPR89P-201ENST00000407924 1495 ntBASIC20.08■□□□□ 0.81
CDKL5O76039 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.08■□□□□ 0.81
CDKL5O76039 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.08■□□□□ 0.81
CDKL5O76039 PRYP5-201ENST00000451909 266 ntBASIC20.08■□□□□ 0.81
CDKL5O76039 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.08■□□□□ 0.81
CDKL5O76039 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.08■□□□□ 0.81
CDKL5O76039 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.08■□□□□ 0.81
CDKL5O76039 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.08■□□□□ 0.81
CDKL5O76039 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.08■□□□□ 0.81
CDKL5O76039 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDKL5O76039 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC20.08■□□□□ 0.8
CDKL5O76039 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CDKL5O76039 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.8
CDKL5O76039 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
CDKL5O76039 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CDKL5O76039 AC097637.2-201ENST00000624096 1997 ntBASIC20.08■□□□□ 0.8
CDKL5O76039 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
CDKL5O76039 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
CDKL5O76039 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CDKL5O76039 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CDKL5O76039 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CDKL5O76039 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
CDKL5O76039 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.07■□□□□ 0.8
CDKL5O76039 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
CDKL5O76039 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 AC060834.1-201ENST00000443027 2032 ntBASIC20.07■□□□□ 0.8
CDKL5O76039 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.07■□□□□ 0.8
CDKL5O76039 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.07■□□□□ 0.8
CDKL5O76039 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CDKL5O76039 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CDKL5O76039 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CDKL5O76039 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.07■□□□□ 0.8
CDKL5O76039 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.07■□□□□ 0.8
CDKL5O76039 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CDKL5O76039 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CDKL5O76039 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.07■□□□□ 0.8
CDKL5O76039 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CDKL5O76039 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CDKL5O76039 AD000864.1-201ENST00000624076 2295 ntBASIC20.07■□□□□ 0.8
CDKL5O76039 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.07■□□□□ 0.8
CDKL5O76039 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDKL5O76039 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.06■□□□□ 0.8
CDKL5O76039 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 AL356309.3-201ENST00000624132 1934 ntBASIC20.06■□□□□ 0.8
CDKL5O76039 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.06■□□□□ 0.8
CDKL5O76039 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CDKL5O76039 AL022326.1-202ENST00000641533 845 ntBASIC20.06■□□□□ 0.8
CDKL5O76039 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDKL5O76039 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
CDKL5O76039 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.06■□□□□ 0.8
CDKL5O76039 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms