Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CLDN3O15551 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 AC016396.2-201ENST00000562575 1417 ntBASIC18.88■□□□□ 0.61
CLDN3O15551 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CLDN3O15551 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CLDN3O15551 AC006504.4-201ENST00000592118 1568 ntBASIC18.88■□□□□ 0.61
CLDN3O15551 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CLDN3O15551 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CLDN3O15551 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.87■□□□□ 0.61
CLDN3O15551 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.87■□□□□ 0.61
CLDN3O15551 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
CLDN3O15551 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.87■□□□□ 0.61
CLDN3O15551 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.87■□□□□ 0.61
CLDN3O15551 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CLDN3O15551 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.87■□□□□ 0.61
CLDN3O15551 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.87■□□□□ 0.61
CLDN3O15551 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.87■□□□□ 0.61
CLDN3O15551 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.87■□□□□ 0.61
CLDN3O15551 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.87■□□□□ 0.61
CLDN3O15551 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.87■□□□□ 0.61
CLDN3O15551 AC012313.1-201ENST00000593393 3059 ntBASIC18.87■□□□□ 0.61
CLDN3O15551 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
CLDN3O15551 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.87■□□□□ 0.61
CLDN3O15551 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.87■□□□□ 0.61
CLDN3O15551 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.87■□□□□ 0.61
CLDN3O15551 PGM5P2-202ENST00000637225 1043 ntBASIC18.87■□□□□ 0.61
CLDN3O15551 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN3O15551 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
CLDN3O15551 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CLDN3O15551 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.87■□□□□ 0.61
CLDN3O15551 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CLDN3O15551 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CLDN3O15551 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CLDN3O15551 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CLDN3O15551 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 GPR89P-201ENST00000407924 1495 ntBASIC18.86■□□□□ 0.61
CLDN3O15551 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.86■□□□□ 0.61
CLDN3O15551 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.86■□□□□ 0.61
CLDN3O15551 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.86■□□□□ 0.61
CLDN3O15551 ELK2BP-201ENST00000415014 1224 ntBASIC18.86■□□□□ 0.61
CLDN3O15551 AC098831.1-202ENST00000438821 336 ntBASIC18.86■□□□□ 0.61
CLDN3O15551 IGHV3-22-201ENST00000520721 359 ntBASIC18.86■□□□□ 0.61
CLDN3O15551 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.86■□□□□ 0.61
CLDN3O15551 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.86■□□□□ 0.61
CLDN3O15551 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CLDN3O15551 AC005593.1-201ENST00000624894 515 ntBASIC18.86■□□□□ 0.61
CLDN3O15551 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.86■□□□□ 0.61
CLDN3O15551 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CLDN3O15551 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CLDN3O15551 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.86■□□□□ 0.61
CLDN3O15551 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CLDN3O15551 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN3O15551 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.85■□□□□ 0.61
CLDN3O15551 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 AC106820.2-201ENST00000563775 3264 ntBASIC18.85■□□□□ 0.61
CLDN3O15551 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLDN3O15551 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.85■□□□□ 0.61
CLDN3O15551 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms