Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.4■□□□□ 0.22
UPK1AO00322 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.4■□□□□ 0.22
UPK1AO00322 AC103564.2-201ENST00000432853 1299 ntBASIC16.4■□□□□ 0.22
UPK1AO00322 MINOS1P3-201ENST00000457048 203 ntBASIC16.4■□□□□ 0.22
UPK1AO00322 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.4■□□□□ 0.22
UPK1AO00322 AC092119.3-201ENST00000612618 583 ntBASIC16.4■□□□□ 0.22
UPK1AO00322 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.4■□□□□ 0.22
UPK1AO00322 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
UPK1AO00322 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.4■□□□□ 0.22
UPK1AO00322 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.4■□□□□ 0.22
UPK1AO00322 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
UPK1AO00322 RNF216P1-203ENST00000404404 2427 ntBASIC16.39■□□□□ 0.21
UPK1AO00322 AL391005.1-201ENST00000623953 2435 ntBASIC16.39■□□□□ 0.21
UPK1AO00322 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.39■□□□□ 0.21
UPK1AO00322 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
UPK1AO00322 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
UPK1AO00322 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
UPK1AO00322 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
UPK1AO00322 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
UPK1AO00322 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.39■□□□□ 0.21
UPK1AO00322 IGHV3-52-201ENST00000519770 353 ntBASIC16.39■□□□□ 0.21
UPK1AO00322 BNIP3P18-201ENST00000593976 575 ntBASIC16.39■□□□□ 0.21
UPK1AO00322 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.39■□□□□ 0.21
UPK1AO00322 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.39■□□□□ 0.21
UPK1AO00322 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 AC026691.1-201ENST00000602502 2017 ntBASIC16.39■□□□□ 0.21
UPK1AO00322 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.39■□□□□ 0.21
UPK1AO00322 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.39■□□□□ 0.21
UPK1AO00322 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.39■□□□□ 0.21
UPK1AO00322 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.39■□□□□ 0.21
UPK1AO00322 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
UPK1AO00322 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
UPK1AO00322 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.38■□□□□ 0.21
UPK1AO00322 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.38■□□□□ 0.21
UPK1AO00322 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.38■□□□□ 0.21
UPK1AO00322 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
UPK1AO00322 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 MYCLP1-201ENST00000372451 1075 ntBASIC16.38■□□□□ 0.21
UPK1AO00322 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.38■□□□□ 0.21
UPK1AO00322 SLC25A1P3-201ENST00000395415 828 ntBASIC16.38■□□□□ 0.21
UPK1AO00322 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
UPK1AO00322 AP000867.3-201ENST00000524675 377 ntBASIC16.38■□□□□ 0.21
UPK1AO00322 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.38■□□□□ 0.21
UPK1AO00322 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.38■□□□□ 0.21
UPK1AO00322 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
UPK1AO00322 AC074051.2-201ENST00000565115 352 ntBASIC16.38■□□□□ 0.21
UPK1AO00322 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.38■□□□□ 0.21
UPK1AO00322 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.38■□□□□ 0.21
UPK1AO00322 AC092329.2-201ENST00000598402 547 ntBASIC16.38■□□□□ 0.21
UPK1AO00322 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.38■□□□□ 0.21
UPK1AO00322 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
UPK1AO00322 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
UPK1AO00322 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
UPK1AO00322 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
UPK1AO00322 PCDHA1-201ENST00000378133 2726 ntBASIC16.38■□□□□ 0.21
UPK1AO00322 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
UPK1AO00322 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
UPK1AO00322 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
UPK1AO00322 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms