Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
UBE2D4Q9Y2X8 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 CICP6-201ENST00000457191 2729 ntBASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 DENND3-207ENST00000518347 850 ntTSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 AC141257.4-201ENST00000634557 245 ntBASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 AC136944.6-201ENST00000634818 245 ntBASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 AC092171.3-201ENST00000610122 2651 ntBASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
UBE2D4Q9Y2X8 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 TBC1D3P5-201ENST00000579401 1545 ntBASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 AC026691.1-201ENST00000602502 2017 ntBASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 AL162727.3-201ENST00000635661 2787 ntBASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 COX5BP2-201ENST00000392354 334 ntBASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 SNORA78-201ENST00000459373 127 ntBASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC12.06□□□□□ -0.48
UBE2D4Q9Y2X8 MST1L-201ENST00000442552 2185 ntBASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms