Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA2Q9Y261 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
FOXA2Q9Y261 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14□□□□□ -0.17
FOXA2Q9Y261 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14□□□□□ -0.17
FOXA2Q9Y261 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC14□□□□□ -0.17
FOXA2Q9Y261 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 MINOS1P3-201ENST00000457048 203 ntBASIC14□□□□□ -0.17
FOXA2Q9Y261 AC104819.1-201ENST00000504587 486 ntBASIC14□□□□□ -0.17
FOXA2Q9Y261 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14□□□□□ -0.17
FOXA2Q9Y261 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC14□□□□□ -0.17
FOXA2Q9Y261 AP000867.3-201ENST00000524675 377 ntBASIC14□□□□□ -0.17
FOXA2Q9Y261 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14□□□□□ -0.17
FOXA2Q9Y261 MIR3180-1-201ENST00000580374 94 ntBASIC14□□□□□ -0.17
FOXA2Q9Y261 MIR3180-3-201ENST00000584616 94 ntBASIC14□□□□□ -0.17
FOXA2Q9Y261 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
FOXA2Q9Y261 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC14□□□□□ -0.17
FOXA2Q9Y261 AGGF1P2-201ENST00000426656 2106 ntBASIC14□□□□□ -0.17
FOXA2Q9Y261 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC14□□□□□ -0.17
FOXA2Q9Y261 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA2Q9Y261 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14□□□□□ -0.17
FOXA2Q9Y261 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 AC012615.1-201ENST00000565797 1299 ntBASIC13.99□□□□□ -0.17
FOXA2Q9Y261 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 AC019129.2-201ENST00000609837 1235 ntBASIC13.99□□□□□ -0.17
FOXA2Q9Y261 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 AC105020.1-201ENST00000435356 2205 ntBASIC13.99□□□□□ -0.17
FOXA2Q9Y261 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
FOXA2Q9Y261 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms