Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
TRIM4Q9C037 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TRIM4Q9C037 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
TRIM4Q9C037 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM4Q9C037 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM4Q9C037 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM4Q9C037 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM4Q9C037 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM4Q9C037 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM4Q9C037 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM4Q9C037 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
TRIM4Q9C037 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
TRIM4Q9C037 AL121761.2-201ENST00000598007 1648 ntBASIC17.36■□□□□ 0.37
TRIM4Q9C037 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM4Q9C037 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 PMS2P1-201ENST00000431037 1228 ntBASIC17.35■□□□□ 0.37
TRIM4Q9C037 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 NEK4P2-201ENST00000580004 1012 ntBASIC17.35■□□□□ 0.37
TRIM4Q9C037 AL121772.3-201ENST00000610840 674 ntBASIC17.35■□□□□ 0.37
TRIM4Q9C037 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 AF228730.7-201ENST00000641842 219 ntBASIC17.35■□□□□ 0.37
TRIM4Q9C037 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 KRT18P1-202ENST00000452408 1331 ntBASIC17.35■□□□□ 0.37
TRIM4Q9C037 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM4Q9C037 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
TRIM4Q9C037 AC099343.3-201ENST00000605834 2503 ntBASIC17.35■□□□□ 0.37
TRIM4Q9C037 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.34■□□□□ 0.37
TRIM4Q9C037 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 AC106795.1-205ENST00000512851 1056 ntBASIC17.34■□□□□ 0.37
TRIM4Q9C037 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM4Q9C037 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 AL662844.1-201ENST00000546340 181 ntBASIC17.34■□□□□ 0.37
TRIM4Q9C037 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM4Q9C037 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms