Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
VRK1Q99986 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.33■□□□□ 0.05
VRK1Q99986 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VRK1Q99986 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VRK1Q99986 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.33■□□□□ 0.04
VRK1Q99986 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
VRK1Q99986 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.33■□□□□ 0.04
VRK1Q99986 MTCL1P1-201ENST00000446207 792 ntBASIC15.33■□□□□ 0.04
VRK1Q99986 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.33■□□□□ 0.04
VRK1Q99986 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.33■□□□□ 0.04
VRK1Q99986 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
VRK1Q99986 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.33■□□□□ 0.04
VRK1Q99986 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.33■□□□□ 0.04
VRK1Q99986 REXO1L9P-201ENST00000604264 2108 ntBASIC15.33■□□□□ 0.04
VRK1Q99986 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
VRK1Q99986 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.33■□□□□ 0.04
VRK1Q99986 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
VRK1Q99986 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.33■□□□□ 0.04
VRK1Q99986 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.33■□□□□ 0.04
VRK1Q99986 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.33■□□□□ 0.04
VRK1Q99986 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VRK1Q99986 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.33■□□□□ 0.04
VRK1Q99986 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
VRK1Q99986 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.32■□□□□ 0.04
VRK1Q99986 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.32■□□□□ 0.04
VRK1Q99986 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.32■□□□□ 0.04
VRK1Q99986 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
VRK1Q99986 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
VRK1Q99986 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
VRK1Q99986 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
VRK1Q99986 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
VRK1Q99986 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 AC079781.3-201ENST00000449110 356 ntBASIC15.32■□□□□ 0.04
VRK1Q99986 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.32■□□□□ 0.04
VRK1Q99986 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.32■□□□□ 0.04
VRK1Q99986 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 MNT-208ENST00000575394 606 ntTSL 4 BASIC15.32■□□□□ 0.04
VRK1Q99986 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.32■□□□□ 0.04
VRK1Q99986 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.32■□□□□ 0.04
VRK1Q99986 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC15.32■□□□□ 0.04
VRK1Q99986 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.32■□□□□ 0.04
VRK1Q99986 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.32■□□□□ 0.04
VRK1Q99986 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
VRK1Q99986 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC15.32■□□□□ 0.04
VRK1Q99986 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VRK1Q99986 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
VRK1Q99986 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VRK1Q99986 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
VRK1Q99986 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.31■□□□□ 0.04
VRK1Q99986 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VRK1Q99986 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC15.31■□□□□ 0.04
VRK1Q99986 CICP6-201ENST00000457191 2729 ntBASIC15.31■□□□□ 0.04
VRK1Q99986 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VRK1Q99986 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VRK1Q99986 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
VRK1Q99986 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
VRK1Q99986 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
VRK1Q99986 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VRK1Q99986 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
VRK1Q99986 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
VRK1Q99986 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VRK1Q99986 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.31■□□□□ 0.04
VRK1Q99986 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms