Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC22.52■■□□□ 1.2
RTF1Q92541 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
RTF1Q92541 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RTF1Q92541 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC22.51■■□□□ 1.19
RTF1Q92541 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC22.51■■□□□ 1.19
RTF1Q92541 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RTF1Q92541 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RTF1Q92541 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC22.51■■□□□ 1.19
RTF1Q92541 PAWRP1-201ENST00000451083 565 ntBASIC22.51■■□□□ 1.19
RTF1Q92541 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC22.51■■□□□ 1.19
RTF1Q92541 AC096734.2-201ENST00000562054 433 ntBASIC22.51■■□□□ 1.19
RTF1Q92541 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
RTF1Q92541 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC22.51■■□□□ 1.19
RTF1Q92541 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC22.51■■□□□ 1.19
RTF1Q92541 AC018470.1-201ENST00000624790 3129 ntBASIC22.51■■□□□ 1.19
RTF1Q92541 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC22.5■■□□□ 1.19
RTF1Q92541 GNAS-203ENST00000306120 1878 ntBASIC22.5■■□□□ 1.19
RTF1Q92541 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RTF1Q92541 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RTF1Q92541 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
RTF1Q92541 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
RTF1Q92541 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
RTF1Q92541 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC22.5■■□□□ 1.19
RTF1Q92541 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC22.5■■□□□ 1.19
RTF1Q92541 FIS1-203ENST00000442303 631 ntTSL 3 BASIC22.5■■□□□ 1.19
RTF1Q92541 AC112482.1-201ENST00000492080 688 ntBASIC22.5■■□□□ 1.19
RTF1Q92541 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC22.5■■□□□ 1.19
RTF1Q92541 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC22.5■■□□□ 1.19
RTF1Q92541 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC22.5■■□□□ 1.19
RTF1Q92541 AC010507.1-201ENST00000633895 436 ntBASIC22.5■■□□□ 1.19
RTF1Q92541 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
RTF1Q92541 AC092865.6-201ENST00000642101 219 ntBASIC22.5■■□□□ 1.19
RTF1Q92541 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
RTF1Q92541 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
RTF1Q92541 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
RTF1Q92541 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC22.5■■□□□ 1.19
RTF1Q92541 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC22.5■■□□□ 1.19
RTF1Q92541 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
RTF1Q92541 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
RTF1Q92541 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RTF1Q92541 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
RTF1Q92541 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
RTF1Q92541 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RTF1Q92541 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
RTF1Q92541 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RTF1Q92541 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RTF1Q92541 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
RTF1Q92541 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RTF1Q92541 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
RTF1Q92541 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC22.49■■□□□ 1.19
RTF1Q92541 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
RTF1Q92541 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RTF1Q92541 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RTF1Q92541 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RTF1Q92541 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
RTF1Q92541 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC22.49■■□□□ 1.19
RTF1Q92541 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC22.49■■□□□ 1.19
RTF1Q92541 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
RTF1Q92541 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RTF1Q92541 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
RTF1Q92541 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RTF1Q92541 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC22.48■■□□□ 1.19
RTF1Q92541 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
RTF1Q92541 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
RTF1Q92541 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
RTF1Q92541 MCCD1P2-201ENST00000423228 335 ntBASIC22.48■■□□□ 1.19
RTF1Q92541 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
RTF1Q92541 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC22.48■■□□□ 1.19
RTF1Q92541 CYB561-216ENST00000582297 897 ntTSL 3 BASIC22.48■■□□□ 1.19
RTF1Q92541 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 AL513190.1-201ENST00000621254 727 ntBASIC22.48■■□□□ 1.19
RTF1Q92541 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
RTF1Q92541 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC22.48■■□□□ 1.19
RTF1Q92541 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RTF1Q92541 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
RTF1Q92541 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC22.47■■□□□ 1.19
RTF1Q92541 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC22.47■■□□□ 1.19
RTF1Q92541 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RTF1Q92541 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RTF1Q92541 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RTF1Q92541 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
RTF1Q92541 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC22.47■■□□□ 1.19
RTF1Q92541 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
RTF1Q92541 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms