Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 PAWRP1-201ENST00000451083 565 ntBASIC17.29■□□□□ 0.36
HMGB4Q8WW32 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
HMGB4Q8WW32 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 AL138781.2-201ENST00000617896 1843 ntBASIC17.28■□□□□ 0.36
HMGB4Q8WW32 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 TIMM8BP1-201ENST00000452384 211 ntBASIC17.28■□□□□ 0.36
HMGB4Q8WW32 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 AC087163.2-201ENST00000457299 853 ntBASIC17.28■□□□□ 0.36
HMGB4Q8WW32 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 SLC25A6P2-201ENST00000497974 877 ntBASIC17.28■□□□□ 0.36
HMGB4Q8WW32 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 AC104581.1-202ENST00000635932 2618 ntBASIC17.28■□□□□ 0.36
HMGB4Q8WW32 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HMGB4Q8WW32 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.27■□□□□ 0.36
HMGB4Q8WW32 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 AC023141.5-201ENST00000458585 616 ntBASIC17.27■□□□□ 0.36
HMGB4Q8WW32 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 AC025678.2-201ENST00000562061 970 ntBASIC17.27■□□□□ 0.36
HMGB4Q8WW32 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HMGB4Q8WW32 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 AC007613.1-201ENST00000572811 2597 ntBASIC17.27■□□□□ 0.35
HMGB4Q8WW32 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
HMGB4Q8WW32 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB4Q8WW32 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms