Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 AC087163.2-201ENST00000457299 853 ntBASIC16.79■□□□□ 0.28
LMX1AQ8TE12 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 SLC25A6P2-201ENST00000497974 877 ntBASIC16.79■□□□□ 0.28
LMX1AQ8TE12 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 AC068137.2-201ENST00000605408 478 ntBASIC16.79■□□□□ 0.28
LMX1AQ8TE12 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LMX1AQ8TE12 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 LYSMD4-203ENST00000378904 2122 ntBASIC16.78■□□□□ 0.28
LMX1AQ8TE12 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 ACTG1P14-201ENST00000446382 1122 ntBASIC16.78■□□□□ 0.28
LMX1AQ8TE12 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 ACTL9-202ENST00000612068 1252 ntBASIC16.78■□□□□ 0.28
LMX1AQ8TE12 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
LMX1AQ8TE12 AL354751.1-201ENST00000412768 1863 ntBASIC16.78■□□□□ 0.28
LMX1AQ8TE12 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 AC006116.8-202ENST00000587620 1550 ntBASIC16.77■□□□□ 0.28
LMX1AQ8TE12 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
LMX1AQ8TE12 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms