Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 HNRNPA3P1-201ENST00000401429 1139 ntBASIC23.2■■□□□ 1.3
NPHP3Q7Z494 HNRNPA3P5-201ENST00000455201 833 ntBASIC23.2■■□□□ 1.3
NPHP3Q7Z494 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 REEP4-207ENST00000523293 913 ntTSL 3 BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 NKG7-205ENST00000600427 520 ntTSL 3 BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 AL138828.2-201ENST00000615812 383 ntBASIC23.2■■□□□ 1.3
NPHP3Q7Z494 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC23.2■■□□□ 1.3
NPHP3Q7Z494 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 TP53TG3HP-202ENST00000569755 579 ntBASIC23.19■■□□□ 1.3
NPHP3Q7Z494 SSH2-210ENST00000582084 560 ntTSL 3 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 AC018529.1-201ENST00000613063 361 ntBASIC23.19■■□□□ 1.3
NPHP3Q7Z494 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC23.19■■□□□ 1.3
NPHP3Q7Z494 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 CDK4-206ENST00000549606 558 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC23.18■■□□□ 1.3
NPHP3Q7Z494 AC007967.4-201ENST00000614700 386 ntBASIC23.18■■□□□ 1.3
NPHP3Q7Z494 STK4-201ENST00000372801 2038 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC23.18■■□□□ 1.3
NPHP3Q7Z494 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 AC009477.1-201ENST00000452936 217 ntBASIC23.17■■□□□ 1.3
NPHP3Q7Z494 HLA-V-204ENST00000476601 1289 ntBASIC23.17■■□□□ 1.3
NPHP3Q7Z494 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
NPHP3Q7Z494 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 AC142381.1-201ENST00000426099 345 ntBASIC23.16■■□□□ 1.3
NPHP3Q7Z494 PTPA-220ENST00000436883 532 ntTSL 4 BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 MPI-209ENST00000564003 1195 ntTSL 2 BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 RARRES2P9-201ENST00000565168 469 ntBASIC23.16■■□□□ 1.3
NPHP3Q7Z494 IFT20-216ENST00000588477 774 ntTSL 5 BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC23.16■■□□□ 1.3
NPHP3Q7Z494 AC016027.1-202ENST00000607927 1699 ntBASIC23.16■■□□□ 1.3
NPHP3Q7Z494 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms