Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PCDH1Q08174 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.7■□□□□ 0.26
PCDH1Q08174 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PCDH1Q08174 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH1Q08174 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PCDH1Q08174 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
PCDH1Q08174 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
PCDH1Q08174 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PCDH1Q08174 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
PCDH1Q08174 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDH1Q08174 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDH1Q08174 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
PCDH1Q08174 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.69■□□□□ 0.26
PCDH1Q08174 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.69■□□□□ 0.26
PCDH1Q08174 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.69■□□□□ 0.26
PCDH1Q08174 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDH1Q08174 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.69■□□□□ 0.26
PCDH1Q08174 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDH1Q08174 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDH1Q08174 AL591684.3-201ENST00000605187 298 ntBASIC16.69■□□□□ 0.26
PCDH1Q08174 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDH1Q08174 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDH1Q08174 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDH1Q08174 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 AP005117.1-201ENST00000584346 1413 ntBASIC16.69■□□□□ 0.26
PCDH1Q08174 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH1Q08174 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDH1Q08174 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PCDH1Q08174 AC080080.1-201ENST00000625121 2420 ntBASIC16.68■□□□□ 0.26
PCDH1Q08174 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.68■□□□□ 0.26
PCDH1Q08174 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.68■□□□□ 0.26
PCDH1Q08174 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH1Q08174 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PCDH1Q08174 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.68■□□□□ 0.26
PCDH1Q08174 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PCDH1Q08174 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDH1Q08174 AC124067.4-201ENST00000519691 2379 ntBASIC16.68■□□□□ 0.26
PCDH1Q08174 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
PCDH1Q08174 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PCDH1Q08174 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
PCDH1Q08174 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH1Q08174 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH1Q08174 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH1Q08174 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH1Q08174 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDH1Q08174 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
PCDH1Q08174 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
PCDH1Q08174 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.67■□□□□ 0.26
PCDH1Q08174 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH1Q08174 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDH1Q08174 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDH1Q08174 AC148477.5-201ENST00000625164 1645 ntBASIC16.67■□□□□ 0.26
PCDH1Q08174 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms