Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HOXA9P31269 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
HOXA9P31269 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXA9P31269 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXA9P31269 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.9■□□□□ 0.46
HOXA9P31269 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXA9P31269 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXA9P31269 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
HOXA9P31269 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.9■□□□□ 0.46
HOXA9P31269 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.9■□□□□ 0.46
HOXA9P31269 AL390961.4-201ENST00000623958 2535 ntBASIC17.9■□□□□ 0.46
HOXA9P31269 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.9■□□□□ 0.46
HOXA9P31269 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXA9P31269 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.9■□□□□ 0.46
HOXA9P31269 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.9■□□□□ 0.46
HOXA9P31269 SPDYE11-202ENST00000450699 704 ntBASIC17.9■□□□□ 0.46
HOXA9P31269 AC067863.1-201ENST00000494933 530 ntBASIC17.9■□□□□ 0.46
HOXA9P31269 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.9■□□□□ 0.46
HOXA9P31269 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HOXA9P31269 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.9■□□□□ 0.46
HOXA9P31269 AC093520.2-201ENST00000561830 333 ntBASIC17.9■□□□□ 0.46
HOXA9P31269 SPDYE9P-201ENST00000570642 692 ntBASIC17.9■□□□□ 0.46
HOXA9P31269 AC005412.3-201ENST00000580309 715 ntBASIC17.9■□□□□ 0.46
HOXA9P31269 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.9■□□□□ 0.46
HOXA9P31269 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.9■□□□□ 0.46
HOXA9P31269 SPDYE10P-202ENST00000612005 668 ntBASIC17.9■□□□□ 0.46
HOXA9P31269 SPDYE8P-202ENST00000612377 668 ntBASIC17.9■□□□□ 0.46
HOXA9P31269 AC093512.1-201ENST00000617969 520 ntBASIC17.9■□□□□ 0.46
HOXA9P31269 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.9■□□□□ 0.46
HOXA9P31269 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HOXA9P31269 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXA9P31269 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXA9P31269 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXA9P31269 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HOXA9P31269 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.9■□□□□ 0.46
HOXA9P31269 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HOXA9P31269 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.89■□□□□ 0.46
HOXA9P31269 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
HOXA9P31269 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HOXA9P31269 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HOXA9P31269 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.89■□□□□ 0.45
HOXA9P31269 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXA9P31269 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 FAM86GP-201ENST00000448322 971 ntBASIC17.89■□□□□ 0.45
HOXA9P31269 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.89■□□□□ 0.45
HOXA9P31269 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.89■□□□□ 0.45
HOXA9P31269 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.89■□□□□ 0.45
HOXA9P31269 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXA9P31269 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.89■□□□□ 0.45
HOXA9P31269 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXA9P31269 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXA9P31269 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HOXA9P31269 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.89■□□□□ 0.45
HOXA9P31269 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HOXA9P31269 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.88■□□□□ 0.45
HOXA9P31269 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HOXA9P31269 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HOXA9P31269 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXA9P31269 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXA9P31269 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXA9P31269 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.88■□□□□ 0.45
HOXA9P31269 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXA9P31269 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXA9P31269 LYSMD4-203ENST00000378904 2122 ntBASIC17.88■□□□□ 0.45
HOXA9P31269 SLC25A6P5-201ENST00000435663 894 ntBASIC17.88■□□□□ 0.45
HOXA9P31269 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.88■□□□□ 0.45
HOXA9P31269 BCRP1-201ENST00000444246 691 ntBASIC17.88■□□□□ 0.45
HOXA9P31269 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.88■□□□□ 0.45
HOXA9P31269 KRT8P48-201ENST00000515599 1220 ntBASIC17.88■□□□□ 0.45
HOXA9P31269 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXA9P31269 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HOXA9P31269 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXA9P31269 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HOXA9P31269 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXA9P31269 RARRES2P8-201ENST00000566335 367 ntBASIC17.88■□□□□ 0.45
HOXA9P31269 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.88■□□□□ 0.45
HOXA9P31269 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXA9P31269 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.88■□□□□ 0.45
HOXA9P31269 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXA9P31269 AL161645.1-201ENST00000622716 1255 ntBASIC17.88■□□□□ 0.45
HOXA9P31269 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXA9P31269 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms