Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.08■□□□□ 0
COL8A1P27658 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.08■□□□□ 0
COL8A1P27658 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.08■□□□□ 0
COL8A1P27658 LINC00982-205ENST00000420957 435 ntBASIC15.08■□□□□ 0
COL8A1P27658 U91328.1-201ENST00000437528 223 ntBASIC15.08■□□□□ 0
COL8A1P27658 FAM185BP-201ENST00000443595 716 ntBASIC15.08■□□□□ 0
COL8A1P27658 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.08■□□□□ 0
COL8A1P27658 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.08■□□□□ 0
COL8A1P27658 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
COL8A1P27658 HILS1-202ENST00000545329 423 ntBASIC15.08■□□□□ 0
COL8A1P27658 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.08■□□□□ 0
COL8A1P27658 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.08■□□□□ 0
COL8A1P27658 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
COL8A1P27658 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC15.08■□□□□ 0
COL8A1P27658 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
COL8A1P27658 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.08■□□□□ 0
COL8A1P27658 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
COL8A1P27658 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
COL8A1P27658 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.08■□□□□ 0
COL8A1P27658 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
COL8A1P27658 AL032819.2-201ENST00000624543 2162 ntBASIC15.07■□□□□ 0
COL8A1P27658 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
COL8A1P27658 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.07■□□□□ 0
COL8A1P27658 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.07■□□□□ 0
COL8A1P27658 PIN1P1-201ENST00000412108 996 ntBASIC15.07■□□□□ 0
COL8A1P27658 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.07■□□□□ 0
COL8A1P27658 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.07■□□□□ 0
COL8A1P27658 FAM86C2P-203ENST00000528684 1004 ntBASIC15.07■□□□□ 0
COL8A1P27658 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
COL8A1P27658 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.07■□□□□ 0
COL8A1P27658 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.07■□□□□ 0
COL8A1P27658 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.07■□□□□ 0
COL8A1P27658 AC243562.1-201ENST00000560672 389 ntBASIC15.07■□□□□ 0
COL8A1P27658 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.07■□□□□ 0
COL8A1P27658 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC15.07■□□□□ 0
COL8A1P27658 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
COL8A1P27658 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
COL8A1P27658 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.07■□□□□ 0
COL8A1P27658 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.07■□□□□ 0
COL8A1P27658 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC15.07■□□□□ 0
COL8A1P27658 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC15.07■□□□□ 0
COL8A1P27658 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.07■□□□□ 0
COL8A1P27658 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
COL8A1P27658 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.07■□□□□ 0
COL8A1P27658 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.06■□□□□ 0
COL8A1P27658 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL8A1P27658 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
COL8A1P27658 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
COL8A1P27658 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
COL8A1P27658 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC15.06■□□□□ 0
COL8A1P27658 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.06■□□□□ 0
COL8A1P27658 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL8A1P27658 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.06■□□□□ 0
COL8A1P27658 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.06■□□□□ 0
COL8A1P27658 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.06■□□□□ 0
COL8A1P27658 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.06■□□□□ 0
COL8A1P27658 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.06■□□□□ 0
COL8A1P27658 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.06■□□□□ 0
COL8A1P27658 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
COL8A1P27658 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL8A1P27658 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.06■□□□□ 0
COL8A1P27658 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.06■□□□□ 0
COL8A1P27658 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.06■□□□□ 0
COL8A1P27658 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.06■□□□□ 0
COL8A1P27658 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
COL8A1P27658 ACTL9-202ENST00000612068 1252 ntBASIC15.06■□□□□ 0
COL8A1P27658 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.06■□□□□ 0
COL8A1P27658 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.06■□□□□ 0
COL8A1P27658 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL8A1P27658 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL8A1P27658 AC093503.3-201ENST00000624917 2352 ntBASIC15.06■□□□□ 0
COL8A1P27658 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
COL8A1P27658 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL8A1P27658 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
COL8A1P27658 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms