Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LY6E-204ENST00000519546 971 ntTSL 2 BASIC21.51■■□□□ 1.03
COL5A3P25940 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC21.51■■□□□ 1.03
COL5A3P25940 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC21.51■■□□□ 1.03
COL5A3P25940 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.51■■□□□ 1.03
COL5A3P25940 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.51■■□□□ 1.03
COL5A3P25940 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL5A3P25940 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
COL5A3P25940 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL5A3P25940 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A3P25940 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.5■■□□□ 1.03
COL5A3P25940 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A3P25940 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A3P25940 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A3P25940 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A3P25940 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC21.5■■□□□ 1.03
COL5A3P25940 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
COL5A3P25940 AC009477.1-201ENST00000452936 217 ntBASIC21.5■■□□□ 1.03
COL5A3P25940 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC21.5■■□□□ 1.03
COL5A3P25940 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A3P25940 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A3P25940 AC004790.1-201ENST00000612686 536 ntBASIC21.5■■□□□ 1.03
COL5A3P25940 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A3P25940 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A3P25940 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A3P25940 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
COL5A3P25940 AC098818.2-201ENST00000564925 2320 ntBASIC21.5■■□□□ 1.03
COL5A3P25940 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
COL5A3P25940 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A3P25940 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL5A3P25940 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.5■■□□□ 1.03
COL5A3P25940 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC21.49■■□□□ 1.03
COL5A3P25940 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC21.49■■□□□ 1.03
COL5A3P25940 AC073389.1-201ENST00000595595 795 ntBASIC21.49■■□□□ 1.03
COL5A3P25940 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL5A3P25940 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.49■■□□□ 1.03
COL5A3P25940 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC21.49■■□□□ 1.03
COL5A3P25940 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.49■■□□□ 1.03
COL5A3P25940 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC21.49■■□□□ 1.03
COL5A3P25940 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC21.49■■□□□ 1.03
COL5A3P25940 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC21.49■■□□□ 1.03
COL5A3P25940 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC21.49■■□□□ 1.03
COL5A3P25940 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.49■■□□□ 1.03
COL5A3P25940 COQ6-210ENST00000554920 649 ntTSL 3 BASIC21.49■■□□□ 1.03
COL5A3P25940 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC21.49■■□□□ 1.03
COL5A3P25940 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL5A3P25940 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC21.49■■□□□ 1.03
COL5A3P25940 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A3P25940 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.48■■□□□ 1.03
COL5A3P25940 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A3P25940 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
COL5A3P25940 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC21.48■■□□□ 1.03
COL5A3P25940 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC21.48■■□□□ 1.03
COL5A3P25940 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC21.48■■□□□ 1.03
COL5A3P25940 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC21.48■■□□□ 1.03
COL5A3P25940 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC21.48■■□□□ 1.03
COL5A3P25940 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC21.48■■□□□ 1.03
COL5A3P25940 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A3P25940 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC21.48■■□□□ 1.03
COL5A3P25940 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC21.48■■□□□ 1.03
COL5A3P25940 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC21.48■■□□□ 1.03
COL5A3P25940 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
COL5A3P25940 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
COL5A3P25940 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A3P25940 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
COL5A3P25940 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A3P25940 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL5A3P25940 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC21.48■■□□□ 1.03
COL5A3P25940 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
COL5A3P25940 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL5A3P25940 AC010336.2-201ENST00000564226 506 ntBASIC21.47■■□□□ 1.03
COL5A3P25940 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21.47■■□□□ 1.03
COL5A3P25940 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC21.47■■□□□ 1.03
COL5A3P25940 AL844908.2-201ENST00000609461 460 ntBASIC21.47■■□□□ 1.03
COL5A3P25940 COQ4-205ENST00000609948 956 ntTSL 2 BASIC21.47■■□□□ 1.03
COL5A3P25940 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC21.47■■□□□ 1.03
COL5A3P25940 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL5A3P25940 AC009113.1-201ENST00000570267 2443 ntBASIC21.47■■□□□ 1.03
COL5A3P25940 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL5A3P25940 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
COL5A3P25940 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
COL5A3P25940 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC21.47■■□□□ 1.03
COL5A3P25940 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL5A3P25940 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL5A3P25940 AL355312.1-201ENST00000407115 2176 ntBASIC21.46■■□□□ 1.03
COL5A3P25940 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC21.46■■□□□ 1.03
COL5A3P25940 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A3P25940 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A3P25940 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL5A3P25940 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms