Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NKAPP1-205ENST00000585790 367 ntBASIC17.24■□□□□ 0.35
MSH3P20585 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.24■□□□□ 0.35
MSH3P20585 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH3P20585 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH3P20585 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH3P20585 AC073592.4-201ENST00000623827 446 ntBASIC17.24■□□□□ 0.35
MSH3P20585 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH3P20585 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.24■□□□□ 0.35
MSH3P20585 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.24■□□□□ 0.35
MSH3P20585 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
MSH3P20585 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MSH3P20585 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSH3P20585 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.23■□□□□ 0.35
MSH3P20585 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MSH3P20585 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MSH3P20585 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MSH3P20585 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MSH3P20585 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.23■□□□□ 0.35
MSH3P20585 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.23■□□□□ 0.35
MSH3P20585 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.23■□□□□ 0.35
MSH3P20585 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MSH3P20585 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
MSH3P20585 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MSH3P20585 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.23■□□□□ 0.35
MSH3P20585 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
MSH3P20585 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MSH3P20585 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.23■□□□□ 0.35
MSH3P20585 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MSH3P20585 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.22■□□□□ 0.35
MSH3P20585 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
MSH3P20585 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.22■□□□□ 0.35
MSH3P20585 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 AC148477.5-201ENST00000625164 1645 ntBASIC17.22■□□□□ 0.35
MSH3P20585 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH3P20585 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH3P20585 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH3P20585 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 SART3-203ENST00000546611 1184 ntBASIC17.22■□□□□ 0.35
MSH3P20585 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.22■□□□□ 0.35
MSH3P20585 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH3P20585 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 AL022326.1-202ENST00000641533 845 ntBASIC17.22■□□□□ 0.35
MSH3P20585 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.22■□□□□ 0.35
MSH3P20585 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
MSH3P20585 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
MSH3P20585 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.22■□□□□ 0.35
MSH3P20585 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
MSH3P20585 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MSH3P20585 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH3P20585 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
MSH3P20585 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
MSH3P20585 AC012313.1-201ENST00000593393 3059 ntBASIC17.21■□□□□ 0.35
MSH3P20585 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH3P20585 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.21■□□□□ 0.35
MSH3P20585 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MSH3P20585 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.21■□□□□ 0.35
MSH3P20585 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.21■□□□□ 0.35
MSH3P20585 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms