Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGA1P17096 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGA1P17096 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGA1P17096 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.82■□□□□ 0.44
HMGA1P17096 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 AC027796.2-201ENST00000575326 344 ntBASIC17.82■□□□□ 0.44
HMGA1P17096 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGA1P17096 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.82■□□□□ 0.44
HMGA1P17096 AC027612.4-201ENST00000605371 583 ntBASIC17.82■□□□□ 0.44
HMGA1P17096 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.82■□□□□ 0.44
HMGA1P17096 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 AL645728.2-201ENST00000641974 660 ntBASIC17.82■□□□□ 0.44
HMGA1P17096 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.82■□□□□ 0.44
HMGA1P17096 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HMGA1P17096 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
HMGA1P17096 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.82■□□□□ 0.44
HMGA1P17096 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
HMGA1P17096 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
HMGA1P17096 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGA1P17096 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGA1P17096 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGA1P17096 AC116353.5-201ENST00000638148 1699 ntBASIC17.81■□□□□ 0.44
HMGA1P17096 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 NOC2LP2-201ENST00000407594 1944 ntBASIC17.81■□□□□ 0.44
HMGA1P17096 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGA1P17096 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
HMGA1P17096 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGA1P17096 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 ADH5P3-201ENST00000433842 1137 ntBASIC17.81■□□□□ 0.44
HMGA1P17096 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGA1P17096 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.81■□□□□ 0.44
HMGA1P17096 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.81■□□□□ 0.44
HMGA1P17096 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.81■□□□□ 0.44
HMGA1P17096 MIR4515-201ENST00000584082 81 ntBASIC17.81■□□□□ 0.44
HMGA1P17096 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGA1P17096 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGA1P17096 AL513210.1-201ENST00000629608 234 ntBASIC17.81■□□□□ 0.44
HMGA1P17096 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.81■□□□□ 0.44
HMGA1P17096 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HMGA1P17096 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGA1P17096 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGA1P17096 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGA1P17096 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGA1P17096 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGA1P17096 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
HMGA1P17096 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGA1P17096 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGA1P17096 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
HMGA1P17096 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
HMGA1P17096 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 AC140658.5-201ENST00000438532 169 ntBASIC17.8■□□□□ 0.44
HMGA1P17096 METTL21AP1-201ENST00000438852 635 ntBASIC17.8■□□□□ 0.44
HMGA1P17096 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGA1P17096 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGA1P17096 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.8■□□□□ 0.44
HMGA1P17096 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGA1P17096 AC105339.1-204ENST00000636249 355 ntBASIC17.8■□□□□ 0.44
HMGA1P17096 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
HMGA1P17096 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGA1P17096 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGA1P17096 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGA1P17096 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGA1P17096 AL121761.2-201ENST00000598007 1648 ntBASIC17.8■□□□□ 0.44
HMGA1P17096 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGA1P17096 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGA1P17096 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms