Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.4■□□□□ 0.86
HMGB1P09429 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.4■□□□□ 0.86
HMGB1P09429 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 LINC01711-201ENST00000598340 967 ntBASIC20.4■□□□□ 0.86
HMGB1P09429 AC092053.1-201ENST00000605787 1936 ntBASIC20.4■□□□□ 0.86
HMGB1P09429 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HMGB1P09429 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HMGB1P09429 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HMGB1P09429 AC004817.3-201ENST00000602957 2129 ntBASIC20.39■□□□□ 0.86
HMGB1P09429 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.39■□□□□ 0.86
HMGB1P09429 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HMGB1P09429 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
HMGB1P09429 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
HMGB1P09429 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
HMGB1P09429 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.39■□□□□ 0.86
HMGB1P09429 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.39■□□□□ 0.85
HMGB1P09429 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB1P09429 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB1P09429 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
HMGB1P09429 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
HMGB1P09429 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.39■□□□□ 0.85
HMGB1P09429 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.39■□□□□ 0.85
HMGB1P09429 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.39■□□□□ 0.85
HMGB1P09429 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.39■□□□□ 0.85
HMGB1P09429 AL355877.3-201ENST00000622820 899 ntBASIC20.39■□□□□ 0.85
HMGB1P09429 AL022326.1-202ENST00000641533 845 ntBASIC20.39■□□□□ 0.85
HMGB1P09429 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB1P09429 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB1P09429 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB1P09429 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC20.39■□□□□ 0.85
HMGB1P09429 AL356309.3-201ENST00000624132 1934 ntBASIC20.39■□□□□ 0.85
HMGB1P09429 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
HMGB1P09429 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB1P09429 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB1P09429 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.38■□□□□ 0.85
HMGB1P09429 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.38■□□□□ 0.85
HMGB1P09429 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.38■□□□□ 0.85
HMGB1P09429 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 LINC00982-205ENST00000420957 435 ntBASIC20.38■□□□□ 0.85
HMGB1P09429 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.38■□□□□ 0.85
HMGB1P09429 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
HMGB1P09429 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 MTDHP3-201ENST00000594186 672 ntBASIC20.38■□□□□ 0.85
HMGB1P09429 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
HMGB1P09429 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
HMGB1P09429 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
HMGB1P09429 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.38■□□□□ 0.85
HMGB1P09429 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB1P09429 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.37■□□□□ 0.85
HMGB1P09429 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
HMGB1P09429 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
HMGB1P09429 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
HMGB1P09429 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
HMGB1P09429 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGB1P09429 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 REXO1L6P-202ENST00000619970 1078 ntBASIC20.37■□□□□ 0.85
HMGB1P09429 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB1P09429 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms