Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 AC022211.2-201ENST00000585075 2527 ntBASIC17.54■□□□□ 0.4
HLA-DQB2P05538 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DQB2P05538 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.53■□□□□ 0.4
HLA-DQB2P05538 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 AC079781.3-201ENST00000449110 356 ntBASIC17.53■□□□□ 0.4
HLA-DQB2P05538 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 NCF1C-201ENST00000438382 1427 ntBASIC17.53■□□□□ 0.4
HLA-DQB2P05538 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 AC020916.1-201ENST00000587762 1774 ntBASIC17.53■□□□□ 0.4
HLA-DQB2P05538 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DQB2P05538 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 AL121912.1-201ENST00000603683 238 ntBASIC17.52■□□□□ 0.4
HLA-DQB2P05538 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DQB2P05538 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.52■□□□□ 0.39
HLA-DQB2P05538 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HLA-DQB2P05538 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.52■□□□□ 0.39
HLA-DQB2P05538 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HLA-DQB2P05538 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.52■□□□□ 0.39
HLA-DQB2P05538 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HLA-DQB2P05538 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
HLA-DQB2P05538 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.51■□□□□ 0.39
HLA-DQB2P05538 AL353135.1-201ENST00000606729 504 ntBASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms