Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
MSH4O15457 OR7E47P-204ENST00000575924 449 ntBASIC19.37■□□□□ 0.69
MSH4O15457 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH4O15457 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSH4O15457 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSH4O15457 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
MSH4O15457 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
MSH4O15457 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH4O15457 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.36■□□□□ 0.69
MSH4O15457 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
MSH4O15457 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.36■□□□□ 0.69
MSH4O15457 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
MSH4O15457 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.36■□□□□ 0.69
MSH4O15457 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.36■□□□□ 0.69
MSH4O15457 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.36■□□□□ 0.69
MSH4O15457 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
MSH4O15457 GGTLC5P-201ENST00000617623 998 ntBASIC19.36■□□□□ 0.69
MSH4O15457 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.36■□□□□ 0.69
MSH4O15457 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH4O15457 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.36■□□□□ 0.69
MSH4O15457 AL023806.1-201ENST00000603994 1649 ntBASIC19.36■□□□□ 0.69
MSH4O15457 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.36■□□□□ 0.69
MSH4O15457 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.35■□□□□ 0.69
MSH4O15457 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.35■□□□□ 0.69
MSH4O15457 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.35■□□□□ 0.69
MSH4O15457 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.35■□□□□ 0.69
MSH4O15457 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
MSH4O15457 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.35■□□□□ 0.69
MSH4O15457 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.35■□□□□ 0.69
MSH4O15457 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.35■□□□□ 0.69
MSH4O15457 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.35■□□□□ 0.69
MSH4O15457 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.35■□□□□ 0.69
MSH4O15457 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
MSH4O15457 AC140113.2-201ENST00000604370 208 ntBASIC19.35■□□□□ 0.69
MSH4O15457 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.35■□□□□ 0.69
MSH4O15457 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
MSH4O15457 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
MSH4O15457 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.35■□□□□ 0.69
MSH4O15457 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
MSH4O15457 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.35■□□□□ 0.69
MSH4O15457 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.35■□□□□ 0.69
MSH4O15457 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.35■□□□□ 0.69
MSH4O15457 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH4O15457 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
MSH4O15457 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH4O15457 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
MSH4O15457 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH4O15457 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH4O15457 AC007967.2-201ENST00000432613 625 ntBASIC19.34■□□□□ 0.69
MSH4O15457 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH4O15457 PRSS29P-201ENST00000440800 595 ntBASIC19.34■□□□□ 0.69
MSH4O15457 SLC25A6P2-201ENST00000497974 877 ntBASIC19.34■□□□□ 0.69
MSH4O15457 KRT18P58-201ENST00000527480 1120 ntBASIC19.34■□□□□ 0.69
MSH4O15457 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH4O15457 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 MIR4751-201ENST00000578027 74 ntBASIC19.34■□□□□ 0.69
MSH4O15457 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.34■□□□□ 0.69
MSH4O15457 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH4O15457 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.34■□□□□ 0.69
MSH4O15457 AC027601.4-201ENST00000611259 610 ntBASIC19.34■□□□□ 0.69
MSH4O15457 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
MSH4O15457 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 AC108860.2-201ENST00000562760 2183 ntBASIC19.34■□□□□ 0.69
MSH4O15457 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH4O15457 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms