Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
BRF1Q92994 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.39■□□□□ 0.85
BRF1Q92994 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
BRF1Q92994 AL020989.1-201ENST00000422979 469 ntBASIC20.39■□□□□ 0.85
BRF1Q92994 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.39■□□□□ 0.85
BRF1Q92994 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.39■□□□□ 0.85
BRF1Q92994 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.39■□□□□ 0.85
BRF1Q92994 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.39■□□□□ 0.85
BRF1Q92994 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 AC004817.3-201ENST00000602957 2129 ntBASIC20.39■□□□□ 0.85
BRF1Q92994 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.39■□□□□ 0.85
BRF1Q92994 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.39■□□□□ 0.85
BRF1Q92994 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
BRF1Q92994 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.39■□□□□ 0.85
BRF1Q92994 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRF1Q92994 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
BRF1Q92994 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.38■□□□□ 0.85
BRF1Q92994 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.38■□□□□ 0.85
BRF1Q92994 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.38■□□□□ 0.85
BRF1Q92994 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.38■□□□□ 0.85
BRF1Q92994 KRT18P31-201ENST00000506277 1292 ntBASIC20.38■□□□□ 0.85
BRF1Q92994 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
BRF1Q92994 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.38■□□□□ 0.85
BRF1Q92994 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.38■□□□□ 0.85
BRF1Q92994 AC012313.10-201ENST00000623509 926 ntBASIC20.38■□□□□ 0.85
BRF1Q92994 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.38■□□□□ 0.85
BRF1Q92994 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.38■□□□□ 0.85
BRF1Q92994 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRF1Q92994 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.38■□□□□ 0.85
BRF1Q92994 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.38■□□□□ 0.85
BRF1Q92994 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.37■□□□□ 0.85
BRF1Q92994 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
BRF1Q92994 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
BRF1Q92994 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
BRF1Q92994 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
BRF1Q92994 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
BRF1Q92994 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.37■□□□□ 0.85
BRF1Q92994 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
BRF1Q92994 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRF1Q92994 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.37■□□□□ 0.85
BRF1Q92994 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
BRF1Q92994 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.37■□□□□ 0.85
BRF1Q92994 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.37■□□□□ 0.85
BRF1Q92994 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.37■□□□□ 0.85
BRF1Q92994 PRELID1P1-202ENST00000567272 903 ntBASIC20.37■□□□□ 0.85
BRF1Q92994 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
BRF1Q92994 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
BRF1Q92994 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRF1Q92994 AC079776.2-201ENST00000641154 1609 ntBASIC20.37■□□□□ 0.85
BRF1Q92994 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
BRF1Q92994 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.37■□□□□ 0.85
BRF1Q92994 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.37■□□□□ 0.85
BRF1Q92994 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
BRF1Q92994 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRF1Q92994 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
BRF1Q92994 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 SIGLEC16-201ENST00000599858 1437 ntBASIC20.36■□□□□ 0.85
BRF1Q92994 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.36■□□□□ 0.85
BRF1Q92994 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 NKILA-202ENST00000614771 2598 ntBASIC20.36■□□□□ 0.85
BRF1Q92994 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 TSPY19P-201ENST00000418461 509 ntBASIC20.36■□□□□ 0.85
BRF1Q92994 TSPY18P-201ENST00000441642 509 ntBASIC20.36■□□□□ 0.85
BRF1Q92994 SIGLEC30P-201ENST00000455569 941 ntBASIC20.36■□□□□ 0.85
BRF1Q92994 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 AL121772.3-201ENST00000610840 674 ntBASIC20.36■□□□□ 0.85
BRF1Q92994 AC073592.4-201ENST00000623827 446 ntBASIC20.36■□□□□ 0.85
BRF1Q92994 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.36■□□□□ 0.85
BRF1Q92994 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.36■□□□□ 0.85
BRF1Q92994 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BRF1Q92994 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.36■□□□□ 0.85
BRF1Q92994 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms