Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC22.55■■□□□ 1.2
RTF1Q92541 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC22.55■■□□□ 1.2
RTF1Q92541 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC22.55■■□□□ 1.2
RTF1Q92541 OR7E47P-204ENST00000575924 449 ntBASIC22.55■■□□□ 1.2
RTF1Q92541 MIR3687-2-201ENST00000577708 61 ntBASIC22.55■■□□□ 1.2
RTF1Q92541 AC010327.4-202ENST00000591484 748 ntBASIC22.55■■□□□ 1.2
RTF1Q92541 MIR3687-1-201ENST00000614492 61 ntBASIC22.55■■□□□ 1.2
RTF1Q92541 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RTF1Q92541 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC22.54■■□□□ 1.2
RTF1Q92541 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC22.54■■□□□ 1.2
RTF1Q92541 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
RTF1Q92541 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 IGLL3P-201ENST00000412472 434 ntBASIC22.54■■□□□ 1.2
RTF1Q92541 UPF3AP3-201ENST00000420996 769 ntBASIC22.54■■□□□ 1.2
RTF1Q92541 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC22.54■■□□□ 1.2
RTF1Q92541 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC22.54■■□□□ 1.2
RTF1Q92541 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC22.54■■□□□ 1.2
RTF1Q92541 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC22.54■■□□□ 1.2
RTF1Q92541 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC22.54■■□□□ 1.2
RTF1Q92541 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC22.54■■□□□ 1.2
RTF1Q92541 MAL2-202ENST00000531508 892 ntTSL 3 BASIC22.54■■□□□ 1.2
RTF1Q92541 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC22.54■■□□□ 1.2
RTF1Q92541 HOTTIP_1.1-201ENST00000620415 57 ntBASIC22.54■■□□□ 1.2
RTF1Q92541 OR6D1P-202ENST00000641007 5290 ntBASIC22.54■■□□□ 1.2
RTF1Q92541 AC007613.1-201ENST00000572811 2597 ntBASIC22.54■■□□□ 1.2
RTF1Q92541 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
RTF1Q92541 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC22.54■■□□□ 1.2
RTF1Q92541 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
RTF1Q92541 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
RTF1Q92541 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC22.53■■□□□ 1.2
RTF1Q92541 GNE-204ENST00000539208 2190 ntTSL 2 BASIC22.53■■□□□ 1.2
RTF1Q92541 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RTF1Q92541 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RTF1Q92541 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RTF1Q92541 AC002310.6-201ENST00000624451 1377 ntBASIC22.53■■□□□ 1.2
RTF1Q92541 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RTF1Q92541 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
RTF1Q92541 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
RTF1Q92541 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
RTF1Q92541 GPX1P2-201ENST00000429271 606 ntBASIC22.53■■□□□ 1.2
RTF1Q92541 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC22.53■■□□□ 1.2
RTF1Q92541 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC22.53■■□□□ 1.2
RTF1Q92541 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC22.53■■□□□ 1.2
RTF1Q92541 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC22.53■■□□□ 1.2
RTF1Q92541 MTDHP5-201ENST00000598980 586 ntBASIC22.53■■□□□ 1.2
RTF1Q92541 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC22.53■■□□□ 1.2
RTF1Q92541 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RTF1Q92541 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC22.53■■□□□ 1.2
RTF1Q92541 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
RTF1Q92541 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RTF1Q92541 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC22.53■■□□□ 1.2
RTF1Q92541 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC22.53■■□□□ 1.2
RTF1Q92541 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RTF1Q92541 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC22.53■■□□□ 1.2
RTF1Q92541 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
RTF1Q92541 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
RTF1Q92541 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
RTF1Q92541 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
RTF1Q92541 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC22.52■■□□□ 1.2
RTF1Q92541 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
RTF1Q92541 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC22.52■■□□□ 1.2
RTF1Q92541 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 RPSAP43-201ENST00000402237 625 ntBASIC22.52■■□□□ 1.2
RTF1Q92541 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
RTF1Q92541 POLD4-207ENST00000531239 584 ntTSL 2 BASIC22.52■■□□□ 1.2
RTF1Q92541 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
RTF1Q92541 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC22.52■■□□□ 1.2
RTF1Q92541 COX5A-206ENST00000568783 571 ntTSL 3 BASIC22.52■■□□□ 1.2
RTF1Q92541 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms