Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 UPF3AP3-201ENST00000420996 769 ntBASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 AC096734.2-201ENST00000562054 433 ntBASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 AL138688.1-201ENST00000624851 1594 ntBASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 AC002310.6-201ENST00000624451 1377 ntBASIC19.18■□□□□ 0.66
CCDC60Q8IWA6 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 AC055717.3-201ENST00000622967 595 ntBASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC60Q8IWA6 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 RHOQP3-201ENST00000437982 621 ntBASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 AC112482.1-201ENST00000492080 688 ntBASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC60Q8IWA6 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 MCCD1P2-201ENST00000423228 335 ntBASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 DNAJB3-201ENST00000446806 729 ntBASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 AC004877.2-201ENST00000623941 599 ntBASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC60Q8IWA6 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms