Protein–RNA interactions for Protein: Q8IVU3

HERC6, Probable E3 ubiquitin-protein ligase HERC6, humanhuman

Predictions only

Length 1,022 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6Q8IVU3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 AC005332.8-201ENST00000622750 2735 ntBASIC18.68■□□□□ 0.58
HERC6Q8IVU3 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HERC6Q8IVU3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 MYCLP1-201ENST00000372451 1075 ntBASIC18.67■□□□□ 0.58
HERC6Q8IVU3 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 AC236430.1-201ENST00000402231 743 ntBASIC18.67■□□□□ 0.58
HERC6Q8IVU3 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 SPDYE11-202ENST00000450699 704 ntBASIC18.67■□□□□ 0.58
HERC6Q8IVU3 HLA-J-202ENST00000469281 1241 ntBASIC18.67■□□□□ 0.58
HERC6Q8IVU3 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 TERF1P3-201ENST00000505638 1227 ntBASIC18.67■□□□□ 0.58
HERC6Q8IVU3 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 AC051619.7-201ENST00000568314 623 ntBASIC18.67■□□□□ 0.58
HERC6Q8IVU3 SPDYE9P-201ENST00000570642 692 ntBASIC18.67■□□□□ 0.58
HERC6Q8IVU3 AC012645.4-201ENST00000610691 1061 ntBASIC18.67■□□□□ 0.58
HERC6Q8IVU3 SPDYE10P-202ENST00000612005 668 ntBASIC18.67■□□□□ 0.58
HERC6Q8IVU3 SPDYE8P-202ENST00000612377 668 ntBASIC18.67■□□□□ 0.58
HERC6Q8IVU3 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERC6Q8IVU3 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 AC099522.2-201ENST00000607001 744 ntBASIC18.66■□□□□ 0.58
HERC6Q8IVU3 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 AL096828.2-201ENST00000567259 1965 ntBASIC18.66■□□□□ 0.58
HERC6Q8IVU3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.66■□□□□ 0.58
HERC6Q8IVU3 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERC6Q8IVU3 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms