Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 LINC02199-201ENST00000506655 2702 ntBASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
PPP4R4Q6NUP7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.64■□□□□ 0.26
PPP4R4Q6NUP7 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
PPP4R4Q6NUP7 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
PPP4R4Q6NUP7 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 AC026691.1-201ENST00000602502 2017 ntBASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.64■□□□□ 0.25
PPP4R4Q6NUP7 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 AL596257.1-201ENST00000641463 2694 ntBASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 AC112907.2-201ENST00000448639 330 ntBASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
PPP4R4Q6NUP7 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms