Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.16■□□□□ 0.18
RFX4Q33E94 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFX4Q33E94 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.15■□□□□ 0.18
RFX4Q33E94 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 KRT8P47-201ENST00000604727 1398 ntBASIC16.15■□□□□ 0.18
RFX4Q33E94 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
RFX4Q33E94 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.15■□□□□ 0.18
RFX4Q33E94 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
RFX4Q33E94 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
RFX4Q33E94 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 ECEL1P3-201ENST00000427961 737 ntBASIC16.15■□□□□ 0.18
RFX4Q33E94 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.15■□□□□ 0.18
RFX4Q33E94 AC092068.3-201ENST00000587894 2016 ntBASIC16.15■□□□□ 0.18
RFX4Q33E94 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
RFX4Q33E94 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
RFX4Q33E94 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.15■□□□□ 0.18
RFX4Q33E94 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.15■□□□□ 0.18
RFX4Q33E94 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
RFX4Q33E94 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX4Q33E94 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX4Q33E94 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.14■□□□□ 0.18
RFX4Q33E94 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.14■□□□□ 0.18
RFX4Q33E94 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.14■□□□□ 0.18
RFX4Q33E94 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
RFX4Q33E94 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.14■□□□□ 0.17
RFX4Q33E94 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.14■□□□□ 0.17
RFX4Q33E94 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.14■□□□□ 0.17
RFX4Q33E94 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.14■□□□□ 0.17
RFX4Q33E94 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
RFX4Q33E94 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
RFX4Q33E94 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
RFX4Q33E94 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
RFX4Q33E94 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
RFX4Q33E94 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.14■□□□□ 0.17
RFX4Q33E94 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.14■□□□□ 0.17
RFX4Q33E94 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 AC078925.2-201ENST00000624013 1973 ntBASIC16.14■□□□□ 0.17
RFX4Q33E94 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
RFX4Q33E94 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
RFX4Q33E94 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
RFX4Q33E94 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFX4Q33E94 AC093525.9-201ENST00000624961 1746 ntBASIC16.14■□□□□ 0.17
RFX4Q33E94 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
RFX4Q33E94 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.13■□□□□ 0.17
RFX4Q33E94 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.13■□□□□ 0.17
RFX4Q33E94 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.13■□□□□ 0.17
RFX4Q33E94 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX4Q33E94 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms