Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.98■□□□□ 0.63
CLCN3P51790 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CLCN3P51790 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.98■□□□□ 0.63
CLCN3P51790 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.98■□□□□ 0.63
CLCN3P51790 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLCN3P51790 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLCN3P51790 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.97■□□□□ 0.63
CLCN3P51790 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CLCN3P51790 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CLCN3P51790 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CLCN3P51790 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLCN3P51790 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.97■□□□□ 0.63
CLCN3P51790 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.97■□□□□ 0.63
CLCN3P51790 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLCN3P51790 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CLCN3P51790 AC087163.2-201ENST00000457299 853 ntBASIC18.97■□□□□ 0.63
CLCN3P51790 SLC25A6P2-201ENST00000497974 877 ntBASIC18.97■□□□□ 0.63
CLCN3P51790 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.97■□□□□ 0.63
CLCN3P51790 KRT19P2-202ENST00000557173 1012 ntBASIC18.97■□□□□ 0.63
CLCN3P51790 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.97■□□□□ 0.63
CLCN3P51790 AL078644.1-201ENST00000609881 752 ntBASIC18.97■□□□□ 0.63
CLCN3P51790 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLCN3P51790 AC134684.3-201ENST00000641758 218 ntBASIC18.97■□□□□ 0.63
CLCN3P51790 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLCN3P51790 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLCN3P51790 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CLCN3P51790 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.97■□□□□ 0.63
CLCN3P51790 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLCN3P51790 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
CLCN3P51790 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.96■□□□□ 0.63
CLCN3P51790 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
CLCN3P51790 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.96■□□□□ 0.63
CLCN3P51790 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.96■□□□□ 0.63
CLCN3P51790 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CLCN3P51790 RHOQP3-201ENST00000437982 621 ntBASIC18.96■□□□□ 0.63
CLCN3P51790 AC004967.1-201ENST00000453589 447 ntBASIC18.96■□□□□ 0.63
CLCN3P51790 AC092183.1-201ENST00000469884 875 ntBASIC18.96■□□□□ 0.63
CLCN3P51790 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.96■□□□□ 0.63
CLCN3P51790 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.96■□□□□ 0.63
CLCN3P51790 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.96■□□□□ 0.63
CLCN3P51790 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.96■□□□□ 0.63
CLCN3P51790 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.96■□□□□ 0.63
CLCN3P51790 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 AC025580.3-201ENST00000617932 1424 ntBASIC18.96■□□□□ 0.63
CLCN3P51790 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CLCN3P51790 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CLCN3P51790 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLCN3P51790 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.95■□□□□ 0.62
CLCN3P51790 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
CLCN3P51790 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CLCN3P51790 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLCN3P51790 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLCN3P51790 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.95■□□□□ 0.62
CLCN3P51790 CXCL1P1-201ENST00000502804 216 ntBASIC18.95■□□□□ 0.62
CLCN3P51790 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.95■□□□□ 0.62
CLCN3P51790 PDPK2P-202ENST00000562415 1191 ntBASIC18.95■□□□□ 0.62
CLCN3P51790 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.95■□□□□ 0.62
CLCN3P51790 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.95■□□□□ 0.62
CLCN3P51790 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CLCN3P51790 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLCN3P51790 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLCN3P51790 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLCN3P51790 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.94■□□□□ 0.62
CLCN3P51790 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
CLCN3P51790 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CLCN3P51790 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
CLCN3P51790 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CLCN3P51790 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
CLCN3P51790 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
CLCN3P51790 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.94■□□□□ 0.62
CLCN3P51790 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms