Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC14.22□□□□□ -0.13
CDX1P47902 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDX1P47902 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14.21□□□□□ -0.13
CDX1P47902 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CDX1P47902 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.21□□□□□ -0.13
CDX1P47902 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC14.21□□□□□ -0.13
CDX1P47902 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 ASL-204ENST00000395331 1538 ntTSL 5 BASIC14.21□□□□□ -0.13
CDX1P47902 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
CDX1P47902 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 TCAF2P1-201ENST00000291129 2421 ntBASIC14.21□□□□□ -0.13
CDX1P47902 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CDX1P47902 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.21□□□□□ -0.13
CDX1P47902 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 TSPY22P-201ENST00000427496 604 ntBASIC14.21□□□□□ -0.13
CDX1P47902 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC14.21□□□□□ -0.13
CDX1P47902 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 TSSC2-201ENST00000450217 709 ntBASIC14.21□□□□□ -0.13
CDX1P47902 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC14.21□□□□□ -0.13
CDX1P47902 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.21□□□□□ -0.13
CDX1P47902 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.21□□□□□ -0.13
CDX1P47902 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.21□□□□□ -0.13
CDX1P47902 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
CDX1P47902 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CDX1P47902 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CDX1P47902 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
CDX1P47902 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CDX1P47902 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
CDX1P47902 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
CDX1P47902 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CDX1P47902 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.21□□□□□ -0.14
CDX1P47902 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
CDX1P47902 AC016734.2-201ENST00000624325 1377 ntBASIC14.21□□□□□ -0.14
CDX1P47902 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CDX1P47902 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CDX1P47902 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CDX1P47902 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CDX1P47902 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CDX1P47902 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.2□□□□□ -0.14
CDX1P47902 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC14.2□□□□□ -0.14
CDX1P47902 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.2□□□□□ -0.14
CDX1P47902 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.2□□□□□ -0.14
CDX1P47902 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC14.2□□□□□ -0.14
CDX1P47902 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC14.2□□□□□ -0.14
CDX1P47902 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.2□□□□□ -0.14
CDX1P47902 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC14.2□□□□□ -0.14
CDX1P47902 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.2□□□□□ -0.14
CDX1P47902 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC14.2□□□□□ -0.14
CDX1P47902 PPOX-214ENST00000535223 664 ntTSL 3 BASIC14.2□□□□□ -0.14
CDX1P47902 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
CDX1P47902 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CDX1P47902 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CDX1P47902 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
CDX1P47902 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC14.2□□□□□ -0.14
CDX1P47902 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CDX1P47902 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.2□□□□□ -0.14
CDX1P47902 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDX1P47902 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.19□□□□□ -0.14
CDX1P47902 AL662844.4-201ENST00000606367 2838 ntBASIC14.19□□□□□ -0.14
CDX1P47902 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.19□□□□□ -0.14
CDX1P47902 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CDX1P47902 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms