Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 ABHD17AP1-201ENST00000358206 933 ntBASIC16.58■□□□□ 0.24
MSX2P35548 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
MSX2P35548 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.58■□□□□ 0.24
MSX2P35548 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 AC005104.2-201ENST00000427818 678 ntBASIC16.58■□□□□ 0.24
MSX2P35548 KRT18P65-201ENST00000439811 1286 ntBASIC16.58■□□□□ 0.24
MSX2P35548 CCR12P-201ENST00000446203 998 ntBASIC16.58■□□□□ 0.24
MSX2P35548 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.58■□□□□ 0.24
MSX2P35548 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.58■□□□□ 0.24
MSX2P35548 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.58■□□□□ 0.24
MSX2P35548 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.58■□□□□ 0.24
MSX2P35548 MIR3917-201ENST00000580971 93 ntBASIC16.58■□□□□ 0.24
MSX2P35548 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.58■□□□□ 0.24
MSX2P35548 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
MSX2P35548 AL139327.4-201ENST00000612362 153 ntBASIC16.58■□□□□ 0.24
MSX2P35548 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.58■□□□□ 0.24
MSX2P35548 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
MSX2P35548 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
MSX2P35548 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
MSX2P35548 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.57■□□□□ 0.24
MSX2P35548 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX2P35548 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX2P35548 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
MSX2P35548 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX2P35548 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.57■□□□□ 0.24
MSX2P35548 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
MSX2P35548 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.57■□□□□ 0.24
MSX2P35548 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX2P35548 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.57■□□□□ 0.24
MSX2P35548 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.57■□□□□ 0.24
MSX2P35548 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.57■□□□□ 0.24
MSX2P35548 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
MSX2P35548 RPS2P55-201ENST00000397318 883 ntBASIC16.57■□□□□ 0.24
MSX2P35548 AL390955.1-201ENST00000428694 934 ntBASIC16.57■□□□□ 0.24
MSX2P35548 AC107956.1-201ENST00000494359 873 ntBASIC16.57■□□□□ 0.24
MSX2P35548 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.57■□□□□ 0.24
MSX2P35548 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.57■□□□□ 0.24
MSX2P35548 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX2P35548 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 AL157888.1-201ENST00000631930 593 ntBASIC16.57■□□□□ 0.24
MSX2P35548 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX2P35548 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.57■□□□□ 0.24
MSX2P35548 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.57■□□□□ 0.24
MSX2P35548 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.57■□□□□ 0.24
MSX2P35548 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX2P35548 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.57■□□□□ 0.24
MSX2P35548 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.57■□□□□ 0.24
MSX2P35548 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSX2P35548 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
MSX2P35548 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.56■□□□□ 0.24
MSX2P35548 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.56■□□□□ 0.24
MSX2P35548 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.56■□□□□ 0.24
MSX2P35548 CYP2T1P-202ENST00000641596 2535 ntBASIC16.56■□□□□ 0.24
MSX2P35548 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
MSX2P35548 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
MSX2P35548 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
MSX2P35548 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.56■□□□□ 0.24
MSX2P35548 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.56■□□□□ 0.24
MSX2P35548 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 INGX-201ENST00000359239 846 ntBASIC16.56■□□□□ 0.24
MSX2P35548 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 PVRIG2P-201ENST00000435460 978 ntBASIC16.56■□□□□ 0.24
MSX2P35548 AC009947.2-201ENST00000444014 672 ntBASIC16.56■□□□□ 0.24
MSX2P35548 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSX2P35548 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.56■□□□□ 0.24
MSX2P35548 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms