Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
TOP3BO95985 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.78■□□□□ 0.44
TOP3BO95985 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.78■□□□□ 0.44
TOP3BO95985 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.78■□□□□ 0.44
TOP3BO95985 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.78■□□□□ 0.44
TOP3BO95985 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
TOP3BO95985 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TOP3BO95985 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 MED15P5-201ENST00000423150 992 ntBASIC17.78■□□□□ 0.44
TOP3BO95985 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.78■□□□□ 0.44
TOP3BO95985 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
TOP3BO95985 AC004967.1-201ENST00000453589 447 ntBASIC17.78■□□□□ 0.44
TOP3BO95985 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.78■□□□□ 0.44
TOP3BO95985 MIR3197-201ENST00000582241 73 ntBASIC17.78■□□□□ 0.44
TOP3BO95985 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.78■□□□□ 0.44
TOP3BO95985 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.78■□□□□ 0.44
TOP3BO95985 AC134684.3-201ENST00000641758 218 ntBASIC17.78■□□□□ 0.44
TOP3BO95985 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TOP3BO95985 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.78■□□□□ 0.44
TOP3BO95985 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.78■□□□□ 0.44
TOP3BO95985 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.78■□□□□ 0.44
TOP3BO95985 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
TOP3BO95985 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TOP3BO95985 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
TOP3BO95985 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TOP3BO95985 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.77■□□□□ 0.44
TOP3BO95985 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
TOP3BO95985 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
TOP3BO95985 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.77■□□□□ 0.44
TOP3BO95985 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
TOP3BO95985 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 YBX2P1-201ENST00000394192 760 ntBASIC17.77■□□□□ 0.44
TOP3BO95985 POM121L3P-201ENST00000419331 1163 ntBASIC17.77■□□□□ 0.44
TOP3BO95985 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TOP3BO95985 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.77■□□□□ 0.44
TOP3BO95985 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.77■□□□□ 0.44
TOP3BO95985 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.77■□□□□ 0.44
TOP3BO95985 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
TOP3BO95985 AL355877.3-201ENST00000622820 899 ntBASIC17.77■□□□□ 0.44
TOP3BO95985 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TOP3BO95985 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.77■□□□□ 0.44
TOP3BO95985 AL138688.1-201ENST00000624851 1594 ntBASIC17.77■□□□□ 0.44
TOP3BO95985 TNRC18P3-201ENST00000441896 2691 ntBASIC17.77■□□□□ 0.44
TOP3BO95985 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TOP3BO95985 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
TOP3BO95985 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
TOP3BO95985 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
TOP3BO95985 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TOP3BO95985 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.77■□□□□ 0.43
TOP3BO95985 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.76■□□□□ 0.43
TOP3BO95985 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
TOP3BO95985 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.76■□□□□ 0.43
TOP3BO95985 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TOP3BO95985 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.76■□□□□ 0.43
TOP3BO95985 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TOP3BO95985 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TOP3BO95985 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TOP3BO95985 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TOP3BO95985 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.76■□□□□ 0.43
TOP3BO95985 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
TOP3BO95985 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.76■□□□□ 0.43
TOP3BO95985 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.76■□□□□ 0.43
TOP3BO95985 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.76■□□□□ 0.43
TOP3BO95985 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TOP3BO95985 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.76■□□□□ 0.43
TOP3BO95985 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.76■□□□□ 0.43
TOP3BO95985 SART3-203ENST00000546611 1184 ntBASIC17.76■□□□□ 0.43
TOP3BO95985 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.76■□□□□ 0.43
TOP3BO95985 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.76■□□□□ 0.43
TOP3BO95985 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TOP3BO95985 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.76■□□□□ 0.43
TOP3BO95985 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TOP3BO95985 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
TOP3BO95985 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.76■□□□□ 0.43
TOP3BO95985 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TOP3BO95985 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TOP3BO95985 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TOP3BO95985 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
TOP3BO95985 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms