Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
RAPGEF3O95398 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC25.64■■□□□ 1.69
RAPGEF3O95398 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC25.64■■□□□ 1.69
RAPGEF3O95398 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
RAPGEF3O95398 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
RAPGEF3O95398 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
RAPGEF3O95398 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC25.63■■□□□ 1.69
RAPGEF3O95398 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RAPGEF3O95398 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC25.63■■□□□ 1.69
RAPGEF3O95398 AP006294.1-201ENST00000415407 339 ntBASIC25.63■■□□□ 1.69
RAPGEF3O95398 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC25.63■■□□□ 1.69
RAPGEF3O95398 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC25.63■■□□□ 1.69
RAPGEF3O95398 AL031055.1-201ENST00000606362 631 ntBASIC25.63■■□□□ 1.69
RAPGEF3O95398 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC25.63■■□□□ 1.69
RAPGEF3O95398 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC25.63■■□□□ 1.69
RAPGEF3O95398 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
RAPGEF3O95398 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RAPGEF3O95398 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC25.63■■□□□ 1.69
RAPGEF3O95398 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RAPGEF3O95398 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC25.63■■□□□ 1.69
RAPGEF3O95398 REXO1L11P-201ENST00000620964 1927 ntBASIC25.63■■□□□ 1.69
RAPGEF3O95398 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
RAPGEF3O95398 AC087499.5-201ENST00000452760 1342 ntBASIC25.63■■□□□ 1.69
RAPGEF3O95398 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC25.63■■□□□ 1.69
RAPGEF3O95398 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RAPGEF3O95398 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RAPGEF3O95398 RAB43P1-201ENST00000561790 589 ntBASIC25.62■■□□□ 1.69
RAPGEF3O95398 AC004790.1-201ENST00000612686 536 ntBASIC25.62■■□□□ 1.69
RAPGEF3O95398 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC25.62■■□□□ 1.69
RAPGEF3O95398 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RAPGEF3O95398 AC135776.1-201ENST00000319817 2481 ntBASIC25.62■■□□□ 1.69
RAPGEF3O95398 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC25.62■■□□□ 1.69
RAPGEF3O95398 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC25.62■■□□□ 1.69
RAPGEF3O95398 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC25.62■■□□□ 1.69
RAPGEF3O95398 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RAPGEF3O95398 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
RAPGEF3O95398 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC25.61■■□□□ 1.69
RAPGEF3O95398 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
RAPGEF3O95398 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
RAPGEF3O95398 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RAPGEF3O95398 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC25.61■■□□□ 1.69
RAPGEF3O95398 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC25.61■■□□□ 1.69
RAPGEF3O95398 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RAPGEF3O95398 AC119751.2-201ENST00000504529 210 ntBASIC25.61■■□□□ 1.69
RAPGEF3O95398 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC25.61■■□□□ 1.69
RAPGEF3O95398 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
RAPGEF3O95398 CHCHD2P3-201ENST00000603038 451 ntBASIC25.61■■□□□ 1.69
RAPGEF3O95398 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
RAPGEF3O95398 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RAPGEF3O95398 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC25.61■■□□□ 1.69
RAPGEF3O95398 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC25.61■■□□□ 1.69
RAPGEF3O95398 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RAPGEF3O95398 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
RAPGEF3O95398 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
RAPGEF3O95398 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC25.61■■□□□ 1.69
RAPGEF3O95398 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RAPGEF3O95398 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RAPGEF3O95398 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RAPGEF3O95398 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
RAPGEF3O95398 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RAPGEF3O95398 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
RAPGEF3O95398 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 MTRF1LP2-201ENST00000506027 1122 ntBASIC25.6■■□□□ 1.69
RAPGEF3O95398 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
RAPGEF3O95398 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
RAPGEF3O95398 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 STX3-203ENST00000529177 1571 ntTSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC25.6■■□□□ 1.69
RAPGEF3O95398 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
RAPGEF3O95398 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
RAPGEF3O95398 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC25.59■■□□□ 1.69
RAPGEF3O95398 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC25.59■■□□□ 1.69
RAPGEF3O95398 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC25.59■■□□□ 1.69
RAPGEF3O95398 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
RAPGEF3O95398 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC25.59■■□□□ 1.69
RAPGEF3O95398 PACS1-203ENST00000524815 628 ntTSL 4 BASIC25.59■■□□□ 1.69
RAPGEF3O95398 AC092552.1-201ENST00000547243 906 ntBASIC25.59■■□□□ 1.69
RAPGEF3O95398 MIR4525-201ENST00000580000 75 ntBASIC25.59■■□□□ 1.69
RAPGEF3O95398 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC25.59■■□□□ 1.69
RAPGEF3O95398 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
RAPGEF3O95398 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
RAPGEF3O95398 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
RAPGEF3O95398 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
RAPGEF3O95398 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
RAPGEF3O95398 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC25.59■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms