Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP2AO43633 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.5■□□□□ 0.71
CHMP2AO43633 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP2AO43633 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.5■□□□□ 0.71
CHMP2AO43633 AL356488.2-201ENST00000602755 427 ntBASIC19.5■□□□□ 0.71
CHMP2AO43633 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.5■□□□□ 0.71
CHMP2AO43633 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CHMP2AO43633 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHMP2AO43633 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CHMP2AO43633 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CHMP2AO43633 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CHMP2AO43633 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP2AO43633 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
CHMP2AO43633 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP2AO43633 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CHMP2AO43633 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP2AO43633 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CHMP2AO43633 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP2AO43633 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP2AO43633 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP2AO43633 KRT18P27-201ENST00000427733 1299 ntBASIC19.49■□□□□ 0.71
CHMP2AO43633 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
CHMP2AO43633 AL139424.1-201ENST00000607572 797 ntBASIC19.49■□□□□ 0.71
CHMP2AO43633 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.49■□□□□ 0.71
CHMP2AO43633 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
CHMP2AO43633 MIR1199-201ENST00000621445 119 ntBASIC19.49■□□□□ 0.71
CHMP2AO43633 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP2AO43633 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CHMP2AO43633 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP2AO43633 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP2AO43633 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CHMP2AO43633 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP2AO43633 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP2AO43633 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
CHMP2AO43633 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP2AO43633 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP2AO43633 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP2AO43633 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CHMP2AO43633 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CHMP2AO43633 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP2AO43633 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP2AO43633 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP2AO43633 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP2AO43633 AC073621.1-201ENST00000392730 636 ntBASIC19.48■□□□□ 0.71
CHMP2AO43633 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP2AO43633 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP2AO43633 AF228730.7-201ENST00000641842 219 ntBASIC19.48■□□□□ 0.71
CHMP2AO43633 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP2AO43633 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP2AO43633 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP2AO43633 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP2AO43633 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP2AO43633 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CHMP2AO43633 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP2AO43633 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP2AO43633 PP12613-201ENST00000424958 2230 ntBASIC19.47■□□□□ 0.71
CHMP2AO43633 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
CHMP2AO43633 PCDHB18P-201ENST00000524813 2368 ntBASIC19.47■□□□□ 0.71
CHMP2AO43633 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP2AO43633 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP2AO43633 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP2AO43633 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP2AO43633 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP2AO43633 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.47■□□□□ 0.71
CHMP2AO43633 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP2AO43633 RPL13AP23-201ENST00000480739 586 ntBASIC19.47■□□□□ 0.71
CHMP2AO43633 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP2AO43633 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.47■□□□□ 0.71
CHMP2AO43633 AC136632.2-201ENST00000512891 861 ntBASIC19.47■□□□□ 0.71
CHMP2AO43633 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.47■□□□□ 0.71
CHMP2AO43633 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP2AO43633 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.47■□□□□ 0.71
CHMP2AO43633 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CHMP2AO43633 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP2AO43633 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHMP2AO43633 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms