Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 AC022144.1-201ENST00000602255 1580 ntBASIC20.85■□□□□ 0.93
ZC3H4Q9UPT8 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 AC100757.3-201ENST00000622361 1406 ntBASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZC3H4Q9UPT8 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 ALG1L8P-201ENST00000533887 760 ntBASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 AC073592.8-201ENST00000624126 511 ntBASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ZC3H4Q9UPT8 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.92
ZC3H4Q9UPT8 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
ZC3H4Q9UPT8 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
ZC3H4Q9UPT8 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZC3H4Q9UPT8 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.83■□□□□ 0.92
ZC3H4Q9UPT8 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ZC3H4Q9UPT8 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
ZC3H4Q9UPT8 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
ZC3H4Q9UPT8 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 TP53TG3HP-202ENST00000569755 579 ntBASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 MIR4515-201ENST00000584082 81 ntBASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 AC017083.2-201ENST00000608069 979 ntBASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 AC007613.1-201ENST00000572811 2597 ntBASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ZC3H4Q9UPT8 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 AC098614.1-201ENST00000368528 745 ntBASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 RPS2P32-201ENST00000439199 892 ntBASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 HILS1-202ENST00000545329 423 ntBASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 AC010336.2-201ENST00000564226 506 ntBASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 AL590560.3-201ENST00000623350 461 ntBASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.81■□□□□ 0.92
ZC3H4Q9UPT8 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms