Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 TSPY16P-201ENST00000449843 468 ntBASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 KLF2P3-201ENST00000451977 1087 ntBASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 AC092919.2-201ENST00000623631 1645 ntBASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 WRB-204ENST00000398753 699 ntTSL 3 BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 GPS2P2-201ENST00000430745 888 ntBASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SHROOM4Q9ULL8 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 AL354751.1-201ENST00000412768 1863 ntBASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 AMT-250ENST00000637682 1823 ntTSL 5 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 RN7SL589P-201ENST00000481268 310 ntBASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 CYB561-216ENST00000582297 897 ntTSL 3 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC32.72■■■□□ 2.83
SHROOM4Q9ULL8 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 AP005018.1-201ENST00000525475 301 ntBASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 SPDYE22P-201ENST00000582158 798 ntBASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 AL358472.5-202ENST00000641448 1267 ntBASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC32.71■■■□□ 2.83
SHROOM4Q9ULL8 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 NAA50-208ENST00000497255 789 ntTSL 5 BASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 GATB-205ENST00000508611 605 ntTSL 2 BASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 AL158211.3-201ENST00000607385 239 ntBASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC32.7■■■□□ 2.83
SHROOM4Q9ULL8 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC32.7■■■□□ 2.82
SHROOM4Q9ULL8 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC32.7■■■□□ 2.82
SHROOM4Q9ULL8 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC32.7■■■□□ 2.82
SHROOM4Q9ULL8 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC32.7■■■□□ 2.82
SHROOM4Q9ULL8 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC32.7■■■□□ 2.82
SHROOM4Q9ULL8 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms