Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDH9Q9ULB4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH9Q9ULB4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDH9Q9ULB4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
CDH9Q9ULB4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH9Q9ULB4 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
CDH9Q9ULB4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH9Q9ULB4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.3■□□□□ 0.52
CDH9Q9ULB4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.3■□□□□ 0.52
CDH9Q9ULB4 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 PI4KAP1-204ENST00000612579 1703 ntBASIC18.29■□□□□ 0.52
CDH9Q9ULB4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 MIR940-201ENST00000401276 94 ntBASIC18.29■□□□□ 0.52
CDH9Q9ULB4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 POLD2P1-201ENST00000511220 997 ntBASIC18.29■□□□□ 0.52
CDH9Q9ULB4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 AC004790.2-201ENST00000623588 572 ntBASIC18.29■□□□□ 0.52
CDH9Q9ULB4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH9Q9ULB4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 MRPL20P1-201ENST00000400819 433 ntBASIC18.28■□□□□ 0.52
CDH9Q9ULB4 CRYGEP-201ENST00000412192 528 ntBASIC18.28■□□□□ 0.52
CDH9Q9ULB4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 MIR4751-201ENST00000578027 74 ntBASIC18.28■□□□□ 0.52
CDH9Q9ULB4 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH9Q9ULB4 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 VN2R19P-201ENST00000442399 1052 ntBASIC18.27■□□□□ 0.52
CDH9Q9ULB4 KRT18P3-201ENST00000451602 1288 ntBASIC18.27■□□□□ 0.52
CDH9Q9ULB4 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.27■□□□□ 0.52
CDH9Q9ULB4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH9Q9ULB4 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH9Q9ULB4 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH9Q9ULB4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.27■□□□□ 0.51
CDH9Q9ULB4 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH9Q9ULB4 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CDH9Q9ULB4 LETM1P2-201ENST00000597330 2178 ntBASIC18.27■□□□□ 0.51
CDH9Q9ULB4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.27■□□□□ 0.51
CDH9Q9ULB4 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH9Q9ULB4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH9Q9ULB4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH9Q9ULB4 PMS2P7-201ENST00000506558 1336 ntBASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms